codeml
There are 9 repositories under codeml topic.
robinvanderlee/positive-selection
Scripts and procedures for detecting positively selected genes and codons in primates
LKremer/MSA_trimmer
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
for-giobbe/BASE
Pronunced /'baze/ - is a tool which allows to integrate non-ubiquitous genes in comparative genomics analyses for selection.
Arkadiy-Garber/ParaHunter
Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs
philippmuench/fastcodeml_docker
fastcodeml inside a docker container
chenyangkang/Fasta2Codeml
A codeml (PAML package) wrapper to make life easier. Dummy input unaligned multi-species fasta file (a single gene), and output codeml result.
philippmuench/selection_docker
dN/dS calculation based on codeml, fastcodeml and slimcodeml
pegi3s/pss-fs
FastScreen: a Compi pipeline for Fast Screening of PSS (Positively Selected Sites).
sing-group/adops
Automatic Detection of Positively Selected Sites