codeml

There are 9 repositories under codeml topic.

robinvanderlee/positive-selection
Scripts and procedures for detecting positively selected genes and codons in primates
Language:Perl19 2 016
LKremer/MSA_trimmer
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
Language:Python16 2 02
for-giobbe/BASE
Pronunced /'baze/ - is a tool which allows to integrate non-ubiquitous genes in comparative genomics analyses for selection.
Language:Shell4 1 01
Arkadiy-Garber/ParaHunter
Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs
Language:Python3 3 20
philippmuench/fastcodeml_docker
fastcodeml inside a docker container
Language:Groff3 2 11
chenyangkang/Fasta2Codeml
A codeml (PAML package) wrapper to make life easier. Dummy input unaligned multi-species fasta file (a single gene), and output codeml result.
Language:Python2 2 00
philippmuench/selection_docker
dN/dS calculation based on codeml, fastcodeml and slimcodeml
Language:C++2 1 01
pegi3s/pss-fs
FastScreen: a Compi pipeline for Fast Screening of PSS (Positively Selected Sites).
Language:Shell1 2 01
sing-group/adops
Automatic Detection of Positively Selected Sites
Language:Java7 0