codon-bias
There are 15 repositories under codon-bias topic.
SouradiptoC/CodonU
A python project for analysis of codon usage for gene or genome analysis
rhondene/Codon-Usage-in-Python
Python3 implementation of commonly used codon usage statistics
tdseher/simple-codon-optimizer
Simple Python program to perform codon optimization or heterology calculations.
alondmnt/codon-bias
Python package of codon usage bias analysis tools
enovoa/codonUsageToolkit
Toolkit to analyze codon usage bias
alondmnt/codon-usage
MATLAB package for codon usage bias and NGS analysis
lindechun/CodonM
Comparative analysis pipeline of Population's Codon Usage
HallemLab/Wild_Worm_Codon_Adapter
Shiny Web app for automatic codon optimization based on codon usage in Strongyloides species, Pristionchus species, Brugia malayi, as well as user-provided custom codon lookup tables
stracquadaniolab/cubseq-nf
CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.
dyyvgug/CUBE
Calculate CUB indices and optimize the gene sequence to enhance expression
webermarcolivier/codon_usage_oncogenes
Analysis of codon usage in oncogene families.
dominiquefastus/NuStru-CodonAnalysis
Retrieving nucleotide sequences for PDB and Uniprot structure on a large scale. Analysis of synonymous codons and codon usage on protein structure and evolution.
juanvillada/H_bonds_ramp
Research on position-dependent hydrogen bonds per codon
MPurushothamRao/Codon-Optimiser-by-codon-bias
It is simple codon optimiser by using codon bias and usage
skchronicles/CodonBias
The following files and programs were used to investigate simulated (in silico) codon bias from pseudo-randomly generated sequences versus PCC7120 DNA condon bias. Several large differences were observed between the codon frequencies of the simulated and actual PCC1720 DNA.