codons

There are 19 repositories under codons topic.

  • oxpig/CaLM

    Protein language model trained on coding DNA

    Language:Python34189

  • Benjamin-Lee/CodonAdaptationIndex

    Python Implementation of Codon Adaption Index

    Language:Jupyter Notebook324119

  • clauswilke/pinetree

    ๐ŸŒฒ a flexible gene expression simulator with codon-specific translation rates

    Language:C++116105

  • tdseher/simple-codon-optimizer

    Simple Python program to perform codon optimization or heterology calculations.

    Language:Python9215

  • alondmnt/codon-bias

    Python package of codon usage bias analysis tools

    Language:Python8122

  • alondmnt/codon-usage

    MATLAB package for codon usage bias and NGS analysis

    Language:MATLAB5100

  • lyy005/codon_alignment

    Codon-based alignment for CDS sequences

    Language:Perl4212

  • UdeM-LBIT/CoreTracker

    CoreTracker, a codon reassignment tracker

    Language:Python4553

  • yhs0602/CodonDalma

    Memorize Nirenberg codon mRNA table components with exciting game! ์ƒ๋ช…๊ณผํ•™ 2 ์ˆ˜๋Šฅ ์„ ํƒ์ž๋“ค์„ ์œ„ํ•œ mRnA ์ฝ”๋ˆ ์•”๊ธฐ ๊ฒŒ์ž„ ์• ํ”Œ๋ฆฌ์ผ€์ด์…˜.

    Language:Java410

  • citrus-mizuha/Codoner

    ใ‚ทใ‚นใƒ†ใƒ ไธŠใงไฝฟ็”จใ™ใ‚‹ๆš—ๅทๅŒ–ใ‚ทใ‚นใƒ†ใƒ ใซใ€mRNAใ‚ณใƒ‰ใƒณใฎไป•็ต„ใฟใ‚’ๅฟœ็”จใ™ใ‚‹็ ”็ฉถใงใ™

    Language:Python30

  • sarthakkg/GeneFinderFromDNA

    Extracts all of the possible genes from a string of DNA

    Language:Java2100

  • siddarthhari95/Gene-Annotation

    Deep Learning LSTM Model for Gene Classification

    Language:Jupyter Notebook221

  • chowington/minmax

    An implementation of the Min-Max algorithm to determine the rareness of the codons within a base pair sequence.

    Language:Python0200

  • fabaindaiz/codons-parser

    Parse codon aminoacids from DNA sequences

    Language:Python0100

  • Serio-Programming/Bioinformatics-Exercises

    Programs to perform work related to bioinformatics such as counting nucleotides in a DNA string, counting point mutations, and calculating bunny rabbit pairs.

    Language:Python0100

  • titarch/cells

    Simple little cellular simulation

    Language:C++0200

  • WileyBui/Computational-Techniques-for-Genomics

    Techniques to analyze biological data generated by genome sequencing, proteomics, cell-wide measurements of gene expression changes. Algorithms for single/multiple sequence alignments/assembly. Search algorithms for sequence databases, phylogenetic tree construction algorithms. Algorithms for gene/promoter and protein structure prediction.

    Language:Python0200

  • jkobject/pycub

    A pipeline to do compute and inference using ML tools on codons and DNA

    Language:Jupyter Notebook20

  • Mordziarz/RSCUcaller

    Program in R for calculating RSCU.

    Language:R10