community-ecology
There are 28 repositories under community-ecology topic.
AndrewLJackson/SIBER
ellipse and convex hull fitting package for stable isotope data
gottacatchenall/MetacommunityDynamics.jl
population and community dynamics on spatial graphs, in julia. (formerly EcoDynamics.jl)
ropensci/phylocomr
Phylocom R interface
DEMENT-Model/DEMENTpy
A spatially explicit trait- and individual-based microbial systems modelling framework
belg92/HMSC
Hierarchical Model of Species Communities (HMSC) is an R package, which provides extensive set of analytical tools devised for numerical analysis of data on ecological communities or other similarly structured data. The methodological core of the HMSC approach is centered on combination of hierarchical regression and latent factor models.
weecology/portalr
A collection of functions to summarize the Portal Data
EcologicalTraitData/ETS
A Data Standard for Ecological Trait Datasets
kohortz/kohortz
Cohortz & Kohortz - Collaboration Portal
zipkinlab/Farr_etal_2022_ConsBiol
M.T. Farr, T. O’Brien, C.B. Yackulic, and E.F. Zipkin. (2022). Quantifying the conservation status and abundance trends of wildlife communities with detection-nondetection data. Conservation Biology e13934.
zipkinlab/Rossman_etal_2016_EcolAndEvol
Rossman S., Ostrom P.H., Gordon F., and Zipkin E.F. 2016. Beyond carbon and nitrogen: guidelines for estimating three‐dimensional isotopic niche space. Ecology and Evolution 6: 2405-2413.
SustainableCommunityDevelopmentHub/nedgreenhouse
hugo static site generator based site hosted on Netlify for Nederland Community Greenhouse project
TobiasRoth/detectionfilter
This repository contains all the materials needed to reproduce Roth et. al (2017): Functional ecology and imperfect detection of species. Methods in Ecology and Evolution.
Constellat-io/Constellatio.github.io
Constellat.io
katherinehebert/insular-mammals
Code to make figures and certain analyses from "Source pool diversity and proximity shape the compositional uniqueness of insular mammal assemblages worldwide" (2021)
BreitmanLab/breitmanlab.github.io
Breitman Lab website
INCT-EECBio/FishPhyloMaker
Making phylogenies for a list of fish species
JTSALAH/Fish-Diversity-Ecology-Assessment
Take advantage of the adehabitat packages in R to determine ecological community richness: including alpha, beta, and gamma diversity!
mabarbour/genes-to-foodweb-stability
This repository contains data and code to reproduce analyses reported in the manuscript, "A keystone gene underlies the persistence of an experimental food web".
marianavelezmunera/CommunityEcologyInR
Code for community ecology analysis
maudbv/trait-analysis-function
R functions for trait analysis of ecological communities
nisiddharth/Blow-The-Garbage
Official Droidrush repository of NPDevs team (Avishkar-2019--Annual Techfest of MNNIT Allahabad)
TraxlerLab/BlodgettProject
Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
cjabradshaw/random-forests-for-predicting-predator-prey-interactions-in-terrestrial-vertebrates
R code for "Predicting predator-prey interactions in terrestrial endotherms using random forest"
cjabradshaw/SiluroDevonianCommunities
Lithofacies and temporal variation predict composition of Siluro-Devonian vertebrate, invertebrate, and plant communities
isaacovercast/gimmeSAD
Joint modelling of abundance and genetic diversity. An integrated model of population genetics and community ecology.
JTSALAH/Mite-Community-Ecology-Assessment
Leverage the vegan packages in R to determine ecological community patterns, and conduct a non-metric multidimensional scaling approach to uncover mite community dynamics.