confocal-images
There are 9 repositories under confocal-images topic.
hansenjn/CiliaQ
An ImageJ plugin to quantify ciliary shape, length, and fluorescence.
Russel88/RCon3D
3D Analysis of confocal images of microbial biofilms/communities
melchisedech333/laser-scanning-microscopy
🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.
AlexSath/prodivis
A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.
lauraluebbert/confocal_z-stack_analysis
Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.
ramonitzzz/FosCounter
Semi-automated script for detection and quantification of c-Fos cells in IHC stained confocal stack images
SharifAmit/CalDenoise
[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.
ramonitzzz/AbetaPlaqueDetection
Python project using Pyimagej to filter images, quantify and analyse particles in mouse brain slices.