confocal-microscopy

WeisongZhao/AdaptiveOptics.simulation

Simulation for sensorless adaptive optics (Confocal microscopy, Modal method)

pmascalchi/ImageJ_Export-LIF-as-Individual-Images

ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)

CardiAP/CardiAp

Python Server for performing biomedical images analysis

Russel88/RCon3D

3D Analysis of confocal images of microbial biofilms/communities

melchisedech333/laser-scanning-microscopy

🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.

qt3uw/qt3-utils

Data Acquisition for Confocal Microscope and Spin Control Experiments

AlexSath/prodivis

A tool to accurately normalize and visualize protein distribution in 3D structures imaged with confocal microscopy using z-stacks.

lauraluebbert/confocal_z-stack_analysis

Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.

dcluet/FIND-CURVE

Automated determination of cell membrane curvature from 3D stacks using the radius of osculating circle approach.

Edgar-La/Procesamiento_digital_de_imagenes-Microscopia_confocal

gabboraron/diagnosztikai_celu_orvosi_kepalkotas

Képalkotás szenzor adatokból

SaradhaVenkatachalapathy/Chromsome-intermingling-region-indentifcation-and-characterisation-of-protein-levels

Analysis performed for the Belyaeva et.al PNAS 2017 Paper

SharifAmit/CalDenoise

[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.

amarcog/Immunofluorescence_2D_Quantification

Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.

AnshumanJaysingh/cell_segment_intensity_distribution

The MatLab code takes confocal TIFF images of cells as input and plots the distribution of different channels after segmentation of the image into features bases on the type of organelles. For getting the membrane features, distance transform is used to obtain a continuos membrane region.

Biophysical-Engineering-Group/GeoV

3D surface reconstruction from confocal microscopy stacks. This software package has been created for the anaylis of 3D vesicle shapes.

rjlopez2/AnlysisOfWaves

Repository containing methods applied for the analysis of the data in the SERCA publication

SchornacklabSLCU/Actin_difference_maps

Quantification of actin dynamics using difference maps (Vidali et al, 2010, The Plant Cell)

SchornacklabSLCU/Actin_skewness-and-occupancy

Analysis of actin dynamics using the method described by Higaki et al. (2009).