copy-number
There are 16 repositories under copy-number topic.
broadinstitute/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
lima1/PureCN
Copy number calling and variant classification using targeted short read sequencing
baudisgroup/segment-liftover
Lifterover copy number segments in whole
ndbrown6/MSK-GRAIL-TECHVAL
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
gustaveroussy/EaCoN
Easy Copy Number !
polyactis/Accucopy
Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data.
HenrikBengtsson/aroma.affymetrix
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
samabs/conliga
Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)
TNTurnerLab/CNPI
Software for Rapid Analyses of Human Copy Number Data
HenrikBengtsson/CostelloPSCNSeq
R package: Parent-specific Copy-number Estimation Pipeline using HT-Seq Data
KrasnitzLab/CNprep
CNprep Package - Pre-process DNA Copy Number (CN) Data for Detection of CN Events
ndbrown6/GAP
Genome Alteration Print (GAP)
HCL-HUBL/KILDA
KILDA (KIv2 Length Determined from a kmer Analysis) provides an alignment-free estimation of the number of KIV2 (Kringle IV type 2) repeats from FASTQ files.
adeschen/CNprep
Processing DNA Copy Number (CN) Data for Detection of CN Events
ndbrown6/CNtu
Copy Number tree utilities (CNtu)
aleighbrown/facets_snakemake
Pipeline for running the FACETS copy number caller using Snakemake