count-table
There are 3 repositories under count-table topic.
bpucker/RNA-Seq_analysis
scripts for RNA-Seq analysis
datasnakes/RNASeek
A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma
Tenzin-Nyima-1/RiMod-FTD
Scripts for the complete analysis pipeline: 1) generation of the count table; 2) annotation of the count-table and differential gene expression analysis; 3) Weighted Gene Coexpression Network Analysis; and, 4) the functional annotation (hypergeometric test) of the hits.