cross-linking
There are 27 repositories under cross-linking topic.
mkdocstrings/autorefs
Automatically link across pages in MkDocs.
pFindStudio/pLink2
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
hgb-bin-proteomics/MSAnnika
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.
fcyu/ECL2
A fast and exhaustive cross-linked peptides identification tool.
hgb-bin-proteomics/MaXLinker_extensions
Extensions for better usability of the cross-linking tool MaXLinker.
hgb-bin-proteomics/MSAnnika_CSM_Annotation
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
hgb-bin-proteomics/MSAnnika_exporters
Export MS Annika crosslink results to different formats.
integrativemodeling/nup82
Modeling of the Nup82 subcomplex of the Nuclear Pore Complex
integrativemodeling/sea
Modeling of the SEA complex
hgb-bin-proteomics/Crosslink_Utils
Helper scripts for crosslink analysis.
hgb-bin-proteomics/MSAnnika_Extensions
List of all available extensions for our cross-linking search engine MS Annika.
hgb-bin-proteomics/MSAnnika_FDR
A script and functions to group and validate MS Annika results.
hgb-bin-proteomics/MSAnnika_MS3_Results
Results and Evaluation of the MS3 Search Algorithm of MS Annika.
hgb-bin-proteomics/MSAnnika_Spectral_Library_exporter
Generate a spectral library for Spectronaut from MS Annika results.
hgb-bin-proteomics/Scout_extensions
Extensions to use the cross-linking tool Scout with other software.
integrativemodeling/26S-PIPs
Modeling the structures of complexes between the 26S proteasome and proteasome interacting proteins
integrativemodeling/nup84
Modeling of the Nup84 subcomplex of the Nuclear Pore Complex
integrativemodeling/pol_ii_g
Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1
integrativemodeling/tfiih
Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps
hgb-bin-proteomics/MSAnnika_Combine_Results
A script to merge and optionally validate several MS Annika search results.
integrativemodeling/Complement
Human complement modeling
integrativemodeling/mediator
Modeling of the yeast Mediator complex
michabirklbauer/apmrs2022
Short Talk Presentation for APMRS 2022
michabirklbauer/apmrs2024
Short talk presentation, poster and abstract for APMRS-CEEPC 2024
napobear/mzt
My Z80 Tools - Credits to Piergiorgio Betti - https://www.z80cpu.eu/projects/78-data-articles/projects/76-mdz80
sdiebolt/simple-xquest
A bash script that simplifies the installation and setup of the xQuest/xProphet pipeline and creates a directory structure to ensure an easy use. Command-line beginner friendly.