cytometry-analysis-pipeline
There are 12 repositories under cytometry-analysis-pipeline topic.
burtonrj/CytoPy
A data-centric flow/mass cytometry automated analysis framework
CamaraLab/STvEA
Spatially-resolved Transcriptomics via Epitope Anchoring
ScalableCytometryImageProcessing/SCIP
Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
luglilab/Cytophenograph
Pipeline for flow cytometry anlaysis
sydneycytometry/CAPX
Cytometry analysis pipeline for large and complex datasets (CAPX) (beta)
niaid/HDStIM
HDStIM: High Dimensional Stimulation Immune Mapping
elijahedmondson/High-Dimensional-Cytometry
R scripts to use various flow cytometry analyses
PaulRegnier/PICAFlow
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
GiulioPr/Generational_multiplex_analysis
Pipeline for the analysis of single-cell familial data from multiplex clonal assay
rohitfarmer/ColabHDStIM
Google Colab interface to HDStIM (High Dimensional Stimulation Immune Mapping)
aligogon/Cytometry-Biotechvana
Cytometry Biotechvana is a prototype of a Shiny application that allows an interactive workflow for flow cytometry data analysis.
SoonDubu923/cytometry-autogating
Autogating for gate 1 and gate 2 with U-Net.