cytometry

There are 59 repositories under cytometry topic.

  • cytoBatchNorm_archive

    A R package to apply Batch Normalization to cytometry

    Language:R1

  • HIPCCyto

    HIPC Cytometry

    Language:R1

  • CyTOF-PlotViewer

    Plots log histograms of FCS files like CyTOF's PlotViewer program

    Language:R1

  • CytoBars

    R script for summarising paramater / channel intensity from flow or mass cytometry data

    Language:R1

  • FCSRead

    Reads and displays Flow Cytometry Standard data files.

    1

  • flowcytometry

    Transcriptic package for flow cytometry to demonstrate continuous integration for experiments

    Language:Python1

  • cytosee

    online version please visit

    Language:R1

  • cytometry-clustering-comparison

    R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

    Language:R1

  • R-Scripts

    R scripts to help with your flow cytometry analysis. Batch index export and overlays

    Language:R1

  • MODS-Subphenotypes

    Repository for MODS subphenotype preprint, data, and code.

  • CyFlowRec

    CyFlowRec is software for collecting FCS (Flow Cytometry Standard) files received via the serial port (RS232 serial interface) from a Partec flow cytometer sent via the TRANSFER function.

    Language:C

  • B-Cells-In-Atherosclerosis

    Work done during rotation with Coleen McNamara & Stefan Bekiranov in UVA BIMS PhD program

    Language:Jupyter Notebook

  • ColabHDStIM

    Google Colab interface to HDStIM (High Dimensional Stimulation Immune Mapping)

    Language:Jupyter Notebook

  • cytometry-autogating

    Autogating for gate 1 and gate 2 with U-Net.

    Language:Python

  • ecm-mmt

    The equivalent circuit model for a parallel electrode impedance cytometer is analyzed together with Maxwell's theory of homogenization of mixtures. It deals with both a modeling single and double shell.

    Language:MATLAB

  • CytoExploreR-Map

    Comparison of Dimensionality Reduction Techniques in CytoExploreR

  • bbsnippets

    This repository contains general examples, code snippets and guidelines.

    Language:HTML

  • microscopy-pipeline

    A meta-package to test pipelines of image processing tools and cytometry-style calibration.

    Language:Python

  • XDP-sort-statistics

    Extracts the sort statistics from the XDP server

    Language:Python

  • Influx-workspace-renamer

    Rename your BD Influx workspaces to the same name found in the 'Name' tag of the workspace

    Language:Python

  • Influx-index-file-counter

    Counts index files and folders produced by the BD Influx

    Language:Python