cyverseuk
There are 35 repositories under cyverseuk topic.
cyverseuk/Documentation
Wiki of CyVerseUK project. Tutorials and overview of technologies.
cyverseuk/renseq
Renseq Pacbio pipeline
cyverseuk/polymarker
Dockerized Agave app for Polymarker, a SNP assay development pipeline
cyverseuk/templates
base templates for Dockerfile and wrappers
cyversewarwick/cyversewarwick.github.io
A static webpage repository where the Warwick CyVerse UK team publish announcements such as workshops and tutorials.
cyverseuk/blast
blast docker image and cyverse integration
cyverseuk/GWASSER
Dockerized Agave app for GWASSER, an R script for simple gwassing.
cyverseuk/mikado
Docker image and JSON files for CyverseUK for Mikado, a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies
cyverseuk/mrbayes
MrBayes app w/docker & mpi
cyverseuk/portcullis
portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis
cyverseuk/RAxML
RAxML agave app and docker image
cyverseuk/tuxedo
Tuxedo suite for up to 4 conditions
cyverseuk/beast
Agave Docker app for BEAST phylo package
cyverseuk/beast2
Beast 2 agave & docker package
cyverseuk/polymarker_wheat
polymarker image with wheat genome
cyverseuk/Retrieve_BIP_Phenotypes
Docker container for retrieveing Phenotypic data from the Brassica Information Portal. It uses the BIP-API, stores output in .csv-format and passes the Sequence IDs on into a .txt file for further queries.
cyverseuk/Trimmomatic
docker image and Agave app for Trimmomatic software