deeplabcut
There are 51 repositories under deeplabcut topic.
DeepLabCut/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
lambdaloop/anipose
🐜🐀🐒🚶 A toolkit for robust markerless 3D pose estimation
AdaptiveMotorControlLab/AmadeusGPT
We turn natural language descriptions of behaviors into machine-executable code
YttriLab/B-SOID
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
DeepLabCut/DeepLabCut-live
SDK for running DeepLabCut on a live video stream
DeepLabCut/DLCutils
Various scripts to support deeplabcut and what to do afterwards!
DeepLabCut/DeepLabCut-Workshop-Materials
Workshop material for using DeepLabCut
AdaptiveMotorControlLab/DLC2Kinematics
a module for kinematic analysis of deeplabcut outputs
amathislab/BUCTD
[ICCV 2023] "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity"
DeepLabCut/DeepLabCut-live-GUI
GUI to run DeepLabCut on live video feed
DeepLabCut/napari-deeplabcut
a napari plugin for labeling and refining keypoint data within DeepLabCut projects
SchwarzNeuroconLab/DeepLabStream
Closed-loop behavioral experiment toolkit using pose estimation of body parts.
DeepLabCut/Docker4DeepLabCut2.0
Docker container for running DeepLabCut 2.0, 2.1 (linux support only). Now, DLC main supports 2.2+
evo-biomech/replicAnt
replicAnt - generating annotated images of animals in complex environments with Unreal Engine
CMGreenspon/NCams
Toolbox for using multiple cameras from intrinsic calculations to reconstructing kinematics
DeepLabCut/DeepLabCut-core
Headless DeepLabCut (no GUI support)
FabianPlum/OmniTrax
Deep learning-driven multi animal tracking and pose estimation add-on for Blender
amathislab/DLC2action
DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.
DeepLabCut/Primer-MotionCapture
A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives
articulateinstruments/DeepLabCut-for-Speech-Production
Trained deep neural-net models for estimating articulatory keypoints from midsagittal ultrasound tongue videos and front-view lip camera videos using DeepLabCut. This research is by Wrench, A. and Balch-Tomes, J. (2022) (https://www.mdpi.com/1424-8220/22/3/1133) (https://doi.org/10.3390/s22031133).
amathislab/dlc2action_annotation
Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.
DeepLabCut/DeepLabCut-WebApp
An alpha playground for a web-based labeling tool for DLC
DeepLabCut/DLC2NWB
Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.
benlansdell/ethome
Tools for machine learning of animal behavior
sollan/alma
Fully automated (rodent) limb motion analysis toolbox for behavioral analysis with bodypart coordinate data, building upon markerless pose estimation.
AlexEMG/DLC-Cajal-Course
Course materials for the Modern Methods for Quantifying Behavior Course!
amathislab/Task-driven-Proprioception
[Cell 2024]: Code for Task-driven neural network models predict neural dynamics of proprioception by Marin Vargas* and Bisi* et al.
bf777/MesoNet
A python toolbox for locating and exporting brain regions from mouse brain images.
eqs/DeepLabCut-Docker
Dockerfile for DeepLabCut 2.0 (https://github.com/AlexEMG/DeepLabCut)
DeepLabCut/DLClibrary
DLClibrary is a lightweight library supporting universal functions for the DeepLabCut ecosystem.
MeysamAmirsardari/PoseModel
PoseModel: An Open-Source Toolkit for Accurate and Robust Automated Behavioral Latent Embedding
michaelrauscher/DLT2DLC
Function for converting DLTdv tracking files into labeled training data for DeepLabCut pose estimation package
amrhkm/POULTRY-POSE-DEEPLABCUT
A model and video dataset for pose estimation on poultry, a crucial data to have for an automated system that could classify the health state of poultry
bf777/DeepCut2RealTime
Real-time tracking and behavioural reinforcement toolbox for DeepLabCut to accompany Forys, Xiao, Gupta, and Murphy (2020).
FraTozz/mouseTracking
Collection of code to analyze behavioral data after deeplabcut prediction of mouse selected body parts.
stes/deeplabcut-docker
Inofficial docker images for DeepLabCut (experimental)