deseq2

There are 93 repositories under deseq2 topic.

  • goncalo2019

    Language:Jupyter Notebook

  • ggplot2_functions

    Language:R

  • quasi-express

    Language:JavaScript

  • DESeq2

    Analysing RNA sequencing data with DESeq2.

    Language:Python

  • simulate-rnaseq

    Workflow to simulate an RNA-seq reads and perform DE-analysis

    Language:Python

  • DESeq2_analysis

    Basic script for RNA-seq analysis with DESeq2

    Language:R

  • CVP-Testing

    Code testing DESeq2 and ALDEx2 R packages against Clock Variability Paper

    Language:R

  • deseq2-windows-setup

    Notes on setting up deseq2 on windows with anaconda

    Language:R
  • miscanthus_starch_rnaseq

    miscanthus_starch_rnaseq

    Transcriptional differences between Miscanthus hybrids with contrasting starch and sucrose concentrations and biomass production

    Language:HTML

  • MotifSearcher

    Here, we describe and provide an RNA-Seq analysis of a RIP assay to understand the mechanism of AML del(9q) progression. (Ali T. Abdallah)

    Language:R

  • Ponroy2020_HMG

    Code to reproduce Ponroy, et. al, 2020 in Human Molecular Gentetics

    Language:R

  • SSU11755

    Project files for the Differential Expression Analysis of RNASeq data for Weiping Cao

    Language:R

  • Chestnut_DEanalysis

    Differential expression analysis - Chestnut

    Language:R

  • recountWorkshop2019

    Workshop proposal for BioC2019 centered around the recount2 resource

    Language:TeX

  • Useful_small_scripts_for_DESeq2

    Some useful scripts useful for parsing or writing DESeq2 Scripts

    Language:Python

  • RNAseqMuscle

    RNA-seq analysis of limb muscles

    Language:R

  • TBRU

    Tuberculosis and the microbiome

    Language:HTML

  • RNA_seq_diff_expression

    Differential expression analysis in R for RNA sequence reads of fission yeast.

    Language:R

  • nextpresso1.9

    Next generation sequencing expression analysis pipeline

    Language:Perl

  • rmskStats

    Tools to count repeat elements form RepeatMasker (RMSK) and infer the enrichment of repeats

    Language:R