dihedral-angles

There are 10 repositories under dihedral-angles topic.

  • mdtraj/mdtraj

    An open library for the analysis of molecular dynamics trajectories

    Language:Python666461.1k292

  • radi0sus/xyz2tab

    Convert XYZ data to bond lengths & angles, calculate contacts, planes and dihedral angles and print tables

    Language:Python36457

  • sbrodehl/MD-AlanineDipeptide

    Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis

    Language:Python17211
  • Ramachandran_Plotter

    Joseph-Ellaway/Ramachandran_Plotter

    Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides in the Top8000 PDB data set.

    Language:Jupyter Notebook12154

  • rob-miller/rFold

    a set of classes and submodules to build, manipulate and analyse three-dimensional protein structures.

    Language:Python4300

  • falategan/motif-conformation-finder

    Python script to find all instances of an amino acid sequence motif in protein structures and parse their internal coordinates

    Language:Python3100

  • maxmeixner/ClassTor

    A python tool for Classification of ligand conformations based on Torsion angles

    Language:Python3100

  • maclav3/dihedral_fitter

    Language:Python0111

  • MzamoTembe/autoencoder

    An autoencoder designed for dimensionality reduction of a protein structure's feature space that describes the structural environment of an amino acid by looking at the relative relative positions, orientations and dihedral angles of neighbouring residues in Euclidean space.

    Language:Python0100

  • obliviateandsurrender/PDB-Reader

    This script aims at reading a given PDB file and generation dihedral angles from it.

    Language:Python00