dna-processing
There are 25 repositories under dna-processing topic.
MAGICS-LAB/DNABERT_2
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
paulstothard/sequence_manipulation_suite
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
liberu-genealogy/php-dna
DNA processing and manipulating for PHP 8.3
slowikj/seqR
fast and comprehensive k-mer counting package
Gagniuc/Sequence-Logo-relative-style
Sequence Logo - relative style is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript.
cgdsoftware/laravel-dna
Package to parse DNA kit files, and import them into Laravel
cgdsoftware/php-dna
A library for reading and writing DNA test kit files in PHP.
Gagniuc/Objective-Digital-Stains
This is an application that shows the informational structure of DNA sequences. The objective digital stain (ODS) is represented by a distribution of points on a two-dimensional image, which reflects the information structure inside a DNA/RNA sequence.
Gagniuc/Objective-Digital-Stains-in-PHP
This code generates Objective Digital Stains (ODSs) and it is implemented in PHP. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.
Gagniuc/Simple-JS-implementation-of-Objective-Digital-Stains
Simple JS implementation of Objective Digital Stain (ODS) produces ODS images from DNA sequences. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.
limitedeternity/FASTAUtils
Various utilities for working with FASTA nucleotide sequences
NavpreetDevpuri/DNAc
DNAc is a programming language for DNAs.
NRCan/Q2Pipe
Qiime2 based pipeline designed to facilitate and standardise ecological studies by metabarcoding using Illumina Miseq data
xerosic/dna-to-protein
Small school project to convert from DNA to mRNA to proteins using C++
daynefiler/mcCNV
R package for estimating copy-number variation from targeted DNA sequencing
mmferrari/ComplSeqUtils
Utility to determine complementary DNA/RNA subsequences
mmferrari/SeqMutationsUtils
Utility to generate codon mutations of a given coding DNA sequence
R-Rijnbeek/DNA_Processing
Repository that has the standard DNA, RNA and Protein Objects and the standard methods to interact with them.
sirineFoudili/Sequence-analysis
DNA sequences manipulation and analysis. Released on 2018.
Syedkumailhaider512/TrueDNA
TrueDNA is a comprehensive and powerful computational biology project focused on DNA prediction and DNA replication. This GitHub repository serves as a central hub for the TrueDNA project, tools, and resources for researchers, computational biologists, and AI enthusiasts working in the field of artificial intelligence and genomics.
borkowsk/PatternBGI
Program do ustalania rozmiarów fragmentów DNA na podstawie tempa migracji na żelu (1992-94)
ckorfmann/snp-counter
Counts all SNP mutations in .map file
OTPiccolo/hcat-cli
HCAT CLI is a command line interface tool to analyze DNA sequence data.
OTPiccolo/hcat-gui
HCAT GUI is a visual tool to analyze and manipulate DNA sequence data.