dnanexus
There are 23 repositories under dnanexus topic.
dnanexus/dxCompiler
WDL and CWL compiler for the DNAnexus platform
CCBR/Dockers
A collection of Dockerfiles to facilitate reproducibility across computing environments.
eastgenomics/automated-archiving
Python script to monitor archiving on DNANexus
collaborativebioinformatics/DSVifier
A bioinformatics pipeline for rapidly evaluating variants and identifying causal variants.
eastgenomics/eggd_athena
DNAnexus app of Athena
moka-guys/dnanexus_ED_cnv_calling
Performs CNV calling using ExomeDepth.
StanfordBioinformatics/trjread-source
Source files for DNAnexus applets
sammyjava/DNAnexus
DNAnexus platform applets
ieee820/common-workflow-language
Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊
MikeRogers0/omniauth-dnanexus
OmniAuth Strategy for DNAnexus
moka-guys/dnanexus_BWA
DNAnexus app mapping FASTQ reads (paired or unpaired) to a reference genome with the BWA-MEM algorithm
moka-guys/dnanexus_congenica_upload
DNAnexus app for uploading samples to the Congenica analysis platform
moka-guys/dnanexus_duty_csv
DNAnexus implementation of duty_csv. To be used in conjunction with process_duty_csv
moka-guys/dnanexus_ED_readcount_analysis
This app calculates the readcount for a batch of samples for CNV calling using ExomeDepth.
moka-guys/dnanexus_fastqc
DNAnexus app generating a QC report on reads data
moka-guys/dnanexus_multiqc
DNAnexus app running MultiQC to generate run wide quality control (QC) using the outputs from MokaAMP, MokaPipe and MokaWES pipelines
moka-guys/dnanexus_normals_readcount_analysis
The app creates a panel of normals for Exomedepth
moka-guys/dnanexus_peddy
DNAnexus app running peddy v0.3.1 (https://github.com/brentp/peddy) to perform a run wide QC check that the assigned gender matches the sample
moka-guys/dnanexus_qiagen_upload
App to upload TSO500 samples to Qiagen
moka-guys/dnanexus_tso500
Runs the Illumina TSO500 local analysis app
moka-guys/dnanexus_upload_multiqc
App to upload multiqc files to genomics server
StanfordBioinformatics/trajectoread
Software suite for updating and managing data on DNAnexus
StanfordBioinformatics/trjread-builder
Command-line tool to automatically build workflows on DNAnexus