drug-target-interactions

There are 58 repositories under drug-target-interactions topic.

  • One_Shot_Siamese_Net_Drug_Discovery

    Language:Python2

  • PGxGDSC

    R scripts included in a bioinformatics pipeline for differential PGx analysis of cancer drug response

    Language:R2

  • project_ifa

    A comprehensive toolkit for handling various machine learning methods and datasets related to drug-target interaction (DTI).

    Language:Python1

  • DEEPScreenWithTest

    DEEPScreen: Virtual Screening with Deep Convolutional Neural Networks Using Compound Images-with test scripts

    Language:Python1

  • spectral-graph-analysis

    Using spectral graph theory to analyze two biological networks

    Language:TeX1

  • KiBA

    An integrated drug-target bioactivity matrix across 52,498 chemical compounds and 467 kinase targets

    1

  • RecSys-for-DTI

    Two matrix factorisation methods to solve drug-target interaction problem

    Language:Jupyter Notebook1

  • gnn-thesis

    Code for Binding Affinity Prediction with Graph Neural Networks

    Language:Jupyter Notebook1

  • NeuRank

    NeuRank: Learning to Ranking with Neural Networks for Drug-Target Interaction Prediction

    Language:Python1

  • jova

    Integrated View Predictive GAN for Drug-Target Indication Prediction

    Language:Python1

  • ProteinNetworkSight

    Code to accompany the paper: ”ProteinNetworkSight efficiently transforms co-expressed protein lists into interactive networks and offers suggestions for their modifications”

    Language:Python

  • AY-GraphDTA

    Addressing the class imbalance problem in deep learning-based drug discovery: a graph neural network to predict drug-target binding affinity of protein fibrils

    Language:Python

  • Drug-Gene-Analogy

    Predicting Drug-Gene Relations via Analogy Tasks with Word Embeddings

  • MultiKD-DTA

    The paper is delivered to ISBRA2024

    Language:Python

  • my-machine-learning-projects

    My Machine Learning Projects

    Language:Jupyter Notebook

  • AlphaFold_Dataset_Drug_Binding_Prediction

    Individual project for 5th year where models were trained to predict whether a drug and a protein bind together using their chemical properties and protein structural embeddings extracted from AlphaFold. Notebooks & Streamlit App Available

    Language:Jupyter Notebook

  • Splits

    Small competition project to evaluate several splitting methods for double cold splits of Drug-Target-Interaction datasets

    Language:Python

  • BNEMDI

    Source code and dataset for paper "BNEMDI: a novel multiple features integrated model for miRNA-drug interaction prediction"

    Language:Python

  • d2md

    D2MD: a DNA-Drug Molecular Docking Suite

    Language:Java