ecoli

FiammettaC/BioVL-Library-Julia

This work aims to explore the differences between Python and Julia and to propose a detailed overview of the best-suited applications for each language. The repository includes mechanistic models in both Python and Julia.

lisavader/plasmidEC

An ensemble of plasmid classification tools

samandmac/PhyloBuild

This is a pipeline that can be used to generate a phylogenetic tree, including a heatmap showing carriage of specific genes, the assigned phylogroup of each strain, and the names of each strain. It should now be capable of working with any sort of strains - currently I'm working on making small improvements.

YogiOnBioinformatics/Synthetic-Biology

Presentations and work done for University of Pittsburgh course, Synthetic Biology.

aleimba/ecoli_VF_collection

Collection of 1069 Escherichia coli virulence factors

mikaalnaik/beach

The Monorepo for all things Toronto Beaches

etheleon/deepore

Nanopore base caller based on original Chiron adding Dropout and SRU

lvn3668/genemark

superphy/kmer

Using machine learning to predict E. coli phenotypes

LichtargeLab/ShinyBioHEAT

A shiny application that identifies the phenotype driving genes in evolved E. coli using Evolutionary Action.

savannahwild/colony-com

Diffusion model of a system where sender strains produce AHL and has induced motility in the presence of arabinose. AHL diffuses and motility in receiver strains.

ssi-dk/BPS_FBI_FSC_VirulenceFinder

Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.

tamer-abdulghani/breast-cancer-ecoli-classification

Machine learning - breast cancer and ecoli - classification

Grv-Singh/D3

📈 Visualize Anti Microbial Research (D3.js). 🎨 Design and development of an interactive 🖥 Website for the iGem IISER team sharing their Research on Culturing hybrid bacteria named Coli Kaze. 🦠

karthik-d/maxent-parameter-inference

Maximum Entropy (MaxEnt) parameter inference in biological networks.

ssi-dk/bifrost_sp_ecoli

Ecoli related analysis for the SOFI platform.

ssi-dk/bps_fbi_sp_ecoli

Ecoli species specific scripts in nbdev2 format.

ssi-dk/ecoli_fbi

Determines the serotype and virulence in Escherichia coli isolates using NGS data (reads) through kmer alignment.

utubun/TxDb.Ecoli.K12.MG1655

Annotation for full-genome assembly of Escherichia coli str. K12, substr. MG1655

WisdomEnigma/MetaBioCargo

Meta-Bio-Cargo predict #Ru-Bi-CO-S protein