ecoli
There are 21 repositories under ecoli topic.
mikaalnaik/Toronto-Beach-App
Toronto's open source beach app
FiammettaC/BioVL-Library-Julia
This work aims to explore the differences between Python and Julia and to propose a detailed overview of the best-suited applications for each language. The repository includes mechanistic models in both Python and Julia.
lisavader/plasmidEC
An ensemble of plasmid classification tools
samandmac/PhyloBuild
This is a pipeline that can be used to generate a phylogenetic tree, including a heatmap showing carriage of specific genes, the assigned phylogroup of each strain, and the names of each strain. It should now be capable of working with any sort of strains - currently I'm working on making small improvements.
YogiOnBioinformatics/Synthetic-Biology
Presentations and work done for University of Pittsburgh course, Synthetic Biology.
aleimba/ecoli_VF_collection
Collection of 1069 Escherichia coli virulence factors
mikaalnaik/beach
The Monorepo for all things Toronto Beaches
etheleon/deepore
Nanopore base caller based on original Chiron adding Dropout and SRU
superphy/kmer
Using machine learning to predict E. coli phenotypes
LichtargeLab/ShinyBioHEAT
A shiny application that identifies the phenotype driving genes in evolved E. coli using Evolutionary Action.
savannahwild/colony-com
Diffusion model of a system where sender strains produce AHL and has induced motility in the presence of arabinose. AHL diffuses and motility in receiver strains.
ssi-dk/bifrost_sp_ecoli
Ecoli related analysis for the SOFI platform.
ssi-dk/BPS_FBI_FSC_VirulenceFinder
Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.
ssi-dk/ecoli_fbi
Determines the serotype and virulence in Escherichia coli isolates using NGS data (reads) through kmer alignment.
tamer-abdulghani/breast-cancer-ecoli-classification
Machine learning - breast cancer and ecoli - classification
Grv-Singh/D3
📈 Visualize Anti Microbial Research (D3.js). 🎨 Design and development of an interactive 🖥 Website for the iGem IISER team sharing their Research on Culturing hybrid bacteria named Coli Kaze. 🦠
karthik-d/maxent-parameter-inference
Maximum Entropy (MaxEnt) parameter inference in biological networks.
ssi-dk/bps_fbi_sp_ecoli
Ecoli species specific scripts in nbdev2 format.
utubun/TxDb.Ecoli.K12.MG1655
Annotation for full-genome assembly of Escherichia coli str. K12, substr. MG1655
WisdomEnigma/MetaBioCargo
Meta-Bio-Cargo predict #Ru-Bi-CO-S protein