ehr-data
There are 59 repositories under ehr-data topic.
cumc-dbmi/cehrbert
CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
aaryapatel007/Patient-Selection-for-Diabetes-Drug-Testing
Built a regression model that predicts the expected days of hospitalization time and an uncertainty range estimation.
yinchangchang/TAME
KDD2020 paper; Identifying Sepsis Subphenotypes via Time-Aware Multi-Modal Auto-Encoder
yhzhu99/pyehr
COVID-19 EHR data analysis pipeline
opensaucerer/attribute-based-access-control
attribute-based access control implementation for EHRs
linzhenyuyuchen/kddMIMIC
Pipeline of Data Extraction, Preprocessing, Representation, and Training for MIMIC-III
carriedaymont/growthcleanr
R package for cleaning anthropometric (height and weight) data from electronic health record systems.
levrex/DiagnosisExtraction_ML
Pipeline for building Machine Learning Classifiers for the diagnosis of EHR text-data. We used this pipeline for our study, published here: https://doi.org/10.2196/23930.
luoyuanlab/autism_precision_medicine
Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.
MuhangTian/TimeDiff
Code to generate realistic synthetic healthcare data with diffusion models
CNAG-Biomedical-Informatics/convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
SAFEHR-data/omopcept
omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.
bsn-si/IPEHR-gateway
IPEHR-gateway is a solution to provide benefits of decentralized architecture to common HMS apps using standard APIs. IPEHR gateway is used to encrypt and decrypt passing data, support AQL queries of encrypted data and manage user’s cryptographic keys.
luoyuanlab/3dmice
Missing data imputation for longitudinal multi-variable EHR data. Paper in JAMIA.
Endava/endava-hl7fhir-openapi
This repo contains demonstration code to illustrate the use of the FIHR standard for healthcare data, developed by the HL7 organisation.
PericlesHat/TACCO
Official implementation of TACCO (Task-guided Co-clustering).
cdcai/premier_analysis
A deep learning project predicting hyperinflammatory syndrome among COVID-19 patients using EHR data.
EternityYW/FairEHR-CLP
Official implementation of "FairEHR-CLP: Towards Fairness-Aware Clinical Predictions with Contrastive Learning in Multimodal Electronic Health Records" (MLHC 2024)
abhilampard/Hospital-Readmission-Prediction-XGBoost
Prediction of a readmission for a patient based on the Electronic Health Records (EHR) data. This project was done as part of a timed challenge with a time limit of 3 hours to work on this dataset. So, it is just a preliminary model using XGBoost algorithm with some basic data exploration for data processing.
aim-rsf/cprd-data-wrangle
Introduction to CPRD using synthetic datasets
magesh-technovator/bio-medical-clinical-ner
Collection of bio-medical and clinical ner models in spacy, stanza, flair with some utility files
matjazbravc/HL7.FHIR.OpenAPI.Demo
OpenAPI which maps custom EHRs into FHIR R4 Patient and Observation resources. Other resources were not implemented (yet).
yaacoo/graphRagSqlator
LLM graph-RAG SQL generator for large databases with poor documentation
MaitreeVaria/Federated-Learning-Rare-Genetic-Disorder-Classification
Welcome to the Federated Learning for Rare Genetic Disorder Classification project! This repository demonstrates the application of Federated Learning (FL) techniques to classify rare genetic disorders using Electronic Health Record (EHR) data while addressing two critical challenges: privacy and limited data availability.
matjazbravc/Endava.Hl7.Fhir.OpenAPI.Demo
OpenAPI which maps custom EHRs into FHIR R4 Patient and Observation resources. Other resources were not implemented (yet).
MuizMahdi/EHR-Route-Mono
The monolithic server-side repository of EHRoute, a secure Electronic Health Records (EHR) storage and sharing solution
Praneethkanchanakuntla/Electronic-Health-Care-System
A Electronic Health Care System is aimed digitalizing the health care by providing the hospital services in online mode.
Simonlee711/ABP_Imputation-With-EHR
[BIG Summer 2022] ABP Imputation with EHR medication data is the second version of the ABP Imputer model.
YujiaBao/Hawkes-ADR
"Hawkes Process Modeling of Adverse Drug Reactions with Longitudinal Observational Data" MLHC 2017
Ashutosh27ind/MIMIC_EHR_Predictor
This is implementation of my Masters thesis work and aims at predicting the patient mortality from the MIMIC-III v1.4 Database
CarlosUziel/diabetes-drug-testing
Identifying which patients to include or exclude from the clinical trials of a new diabetes drug based on predicted hospitalization time given by a machine learning regression model
jerrodanzalone/Rural-Urban-Mapping-Protocol-for-Linking-External-Sources
This pilot project deploys a supplemental OMOP table to map external measures of rurality (RUCC and RUCA).
jordandeklerk/EHR-BERT
BERT style transformer model on CMS synthetic EHR data for diagnosis and procedure prediction in PyTorch
premchand9985/Predicting_Incident_HeartFailure_Disease_Based-on-Transformers
This repository hosts a cutting-edge deep learning model developed to predict 6-month incident heart failure utilizing electronic health records (EHRs). Heart failure is a multifaceted medical condition characterized by its significant impact on patients' well-being and healthcare systems.
sulagnag/Udacity_AI_for_Healthcare-P3-EHR-Diebetes-Drug-Testing
Predict patients who are likely to be in the hospital for at-least 5-7 days
yhzhu99/pyehr-playground
COVID-19 EHR Benchmark - Online Platform