epigenetic-data

There are 9 repositories under epigenetic-data topic.

  • Zhong-Lab-UCSD/Genomic-Interactive-Visualization-Engine

    Genomic Interactive Visualization Engine

    Language:JavaScript142103231

  • epiviz/epiviz

    EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

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  • QData/DeepChrome

    Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications

    Language:Lua629914

  • QData/AttentiveChrome

    NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

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  • MuteJester/PyNCBI

    A Python API library for exploration and data retrieval from NCBI

    Language:Python4103

  • guanjue/snapshot_pre

    Snapshot: a model-free method for clustering and visualizing epigenomic data

    Language:C++3200

  • constantingoeldel/alphabeta-rs

    Tools for epigenetic data analysis

    Language:Rust2100

  • jawa23bio/cEpiReg

    Our comprehensive database integrates data from scRNA seq and sc-ATAC seq, identifying cis-regulatory elements (CREs) through comparison with ENCODE, Epimap, GWAS Catalog, and other datasets. By connecting transcription factors (TFs), CREs, and target genes, cEpiReg unveils hidden regulatory links crucial for understanding AD pathogenesis.

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  • sung/CSMD1.paper

    R codes of the figures from the Epigenetics CSMD1 paper

    Language:R1201