fast5
There are 13 repositories under fast5 topic.
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
novoalab/modPhred
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
Psy-Fer/fast5_fetcher
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
mbhall88/fast5seek
Subset of fast5 files contained in a fastq, BAM, or SAM file.
bsaintjo/slow5-rs
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
rnajena/read5
Wrapper to read fast5, slow5, blow5 and pod5 files.
CMU-SAFARI/Molecules2Variations
The first work to provide a comprehensive survey of a prominent set of algorithmic improvement and hardware acceleration efforts for the entire genome analysis pipeline used for the three most prominent sequencing data, short reads (Illumina), ultra-long reads (ONT), and accurate long reads (HiFi). Described in arXiv (2022) by Alser et al. https://arxiv.org/abs/2205.07957
bsaintjo/pod5-rs
Rust library to support interacting with Oxford Nanopore POD5 files
mbhall88/tinysink
Synchronise Nanopore reads with a server.
Shians/PorexploreR
Bob Loblaw's Law Blog Applauds Porexplorer
JannesSP/read5.github.io
Documentation for the https://github.com/JannesSP/read5 repository
rnajena/read5_ont
Wrapper to read fast5 and pod5 files.
asadprodhan/Dorado-basecalled-reads-improve-old-bacterial-genome-assembly
Dorado-basecalled reads improve old bacterial genome assembly