fasta-sequences

There are 70 repositories under fasta-sequences topic.

  • SNPGenie

    chasewnelson/SNPGenie

    Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

    Language:Perl110107637

  • josiahseaman/FluentDNA

    FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

    Language:JavaScript658827

  • laurentnoe/yass

    genomic alignment similarity search tool

    Language:C19256

  • chasewnelson/EBT

    Evolutionary Bioinformatics Toolkit (EBT)

    Language:Perl11424

  • ramsainanduri/split_multi_fasta

    Split multi fasta file into single fasta files

    Language:Python9208

  • suchapalaver/fastas2kmers

    A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

    Language:Python9110

  • kchu25/SeqShuffle.jl

    Shuffle the string sequences such that the k-mer frequency is preserved in each string

    Language:Julia8110

  • kit4b/kit4b

    A fully integrated K-mer Informed Toolkit for Bioinformatics

    Language:C++5100

  • sing-group/seda

    SEquence DAtaset builder

    Language:Java5602

  • AJVelezRueda/sequence_clustering

    Sequence clustering and database creation using mmseqs, from local fasta files

    Language:Python4100

  • CNuge/go-fasta

    A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format

    Language:Go4201

  • zmmason/BINF

    Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

    Language:Python4100

  • abhijeetsingh1704/clean_DNA_fasta

    Program to clean DNA fasta sequences

    Language:Shell3201
  • PROST-witout-AlphaFold2

    ShahidIqb/PROST-witout-AlphaFold2

    A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only.

    Language:Python3101

  • sooraj14072001/TEAM-GENOMICS-ONE

    Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!

    3100

  • yangao07/fxtools

    fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data

    Language:C3200

  • abhijeetsingh1704/DupRemover

    Removes duplicate sequences in multifasta file

    Language:Python2213

  • BTalamantesBecerra/omicR

    omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.

    Language:Python2102

  • BTalamantesBecerra/omicR_for_RStudio

    omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use reference genomes from NCBI, or any other genetic sequence that you would like to use as reference.

    Language:Python2100

  • pavlohrab/process_fasta

    A small collection of one-liners in a one bash script for fasta files processing.

    Language:Shell2101

  • pswsm/fasta_cli_tools

    A small fasta CLI toolkit developed in Rust

    Language:Rust2100

  • Xyaneon/sequence-aligner

    Performs semi-global alignments on FASTA sequences. Homework 3 for Dr. Miller's Intro to Bioinformatics class.

    Language:Python2260

  • 0AlphaZero0/Aloneinthedark2.0-Master-Project

    Terminal App to find ORF

    Language:Python1200

  • abhijeetsingh1704/fastA2Q

    simple and convenient program to convert fasta sequences to fastq sequences

    Language:Shell1201

  • Amirreza-Mousavi/Protein_Normalized_SW_Similarity_Score

    An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

    Language:R1100

  • AngeloGith/SeqCutter

    SeqCutter is designed to extract specific subsequences from a FASTA file based on a cluster definition.

    Language:Perl1100
  • Bioinformatics

    erma0x/Bioinformatics

    Bioinformatics knowledge and tools.

    Language:Jupyter Notebook1100

  • IbrahimElzahaby/Erasmus_MC_Internship

    Plasmidome analysis to track the transfer route of AMR genes in bacteria

    Language:Jupyter Notebook1100

  • limitedeternity/FASTAUtils

    Various utilities for working with FASTA nucleotide sequences

    Language:Dart110

  • moozeq/awd-fasta-plots

    Creating plots using FASTA amino-acid files

    Language:Python1200

  • Picani/fastalen

    Small and fast FASTA sequences length fetcher

    Language:C1100

  • PNNL-Comp-Mass-Spec/Fasta-Organism-Filter

    Reads a protein FASTA file and filters the proteins by organism name, protein name, or taxonomy ID to create a new, filtered file.

    Language:C#11001

  • sooraj14072001/TEAM-GENOMICS_ONE

    Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!

    1100

  • assadiab/Smith-waterman

    🧬 Implementation of the Smith-Waterman algorithm for aligning amino acid sequences.

    Language:C0100

  • tusharpandey003/FASTA-Sequence-Analysis-Web-App

    Analysis of FASTA ,Protein,DNA sequence.

    Language:Python0100

  • Ramy-Badr-Ahmed/Bioinformatics-Misc-Scripts

    Miscellaneous Scripts in Bioinformatics

    Language:Python10