fiji-macro
There are 44 repositories under fiji-macro topic.
gtatters/ThermImageJ
ImageJ functions and macros for working with thermal image files
MontpellierRessourcesImagerie/imagej_macros_and_scripts
ImageJ macros and scripts written at the imaging facility MRI
quantixed/imagej-macros
quantixed FIJI update site
pmascalchi/ImageJ_Export-LIF-as-Individual-Images
ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)
IMBalENce/EM-tool
an ImageJ toolset for EM image analysis
ElisabethKugler/GliaMorph
#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology
acaccavano/deltaFoF
Set of ImageJ (FIJI) macros to import raw TIF images of time series Calcium imaging recordings, correct for photo-bleaching, identify regions of highest fluorescence change to assist in ROI placement, and calculate deltaF/F as a function of time for each ROI. Please cite Caccavano et. al. bioRxiv 2020.
amironov21/ImageJ_stereology
Stereological macros for ImageJ
boonepeter/snyder-imagej
A repository containing ImageJ macros for the Snyder Lab
bruvellu/imagej-macros
Collection of macros for image processing in Fiji/ImageJ
Guyon-J/Macro_for_Spheroid_Analysis
A simple macro to analysis spheroid areas
rsenft1/FISH-IHC-Colocalization-in-ImageJ
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
sandorbx/Parallel-Fiji-CMTK-Registration
Bringing the powerfull CMTK registration tool to ImageJ, multi platform, parallel automatic batch processing, neat user interface, works out of the box.
assafna/cell-ecm-project
Quantifying the dynamics of long-range cell-cell mechanical communication paper code
MontpellierRessourcesImagerie/mripy
MRI ImageJ related python (jython) module.
Turku-BioImaging/filopodia-counter
Fiji script for automated filopodia counting from single cell images.
amarcog/Immunofluorescence_2D_Quantification
Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.
BenjaminEscribano/PrairieDataManager
Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji
Deichmatrix/M4_ImageJ-Fiji_HUVEC_Sammelauswertung
Automatisiert Auswertung von Mikroskopbildern
Galtan-dev/Electroforetic-result-atuomatic-evaluation
Automatic evaluation of electroforesis results from photos
GiacomoGiacomelli/Cell-Profiles-and-Demographs
R-Scripts and Fiji-macro used for the construction of kymographs based on fluorescence profiles
Guyon-J/Coculture_Gliomas-Neurons
Image process framework to easily analyse fluorescent glioblastoma cells in pattern of neurons.
JGanChong/ImageJ-Codes
Compilation of ImageJ macros to do a wide variety of functions.
KeesStraatman/Delete-ROI
ImageJ/Fiji macro to delete ROIs from image, ROI manager and Results table
Leo-KRUTTLI/MCZ-marco
A FIJI macro to automate merge, crop/resize and projection z
macromeer/ijm_macros
A collection of Fiji / ImageJ macros for basic batch processing of microscopy images
maroiliop/Enrichment-Analysis
FIJI macros for Enrichment Analysis
monolyt/SliceNicer
ImageJ macro for normalization of time lapse images against a reference image
NOBIC-NTU/FIJI-Macros
FIJI/Image J macros created by NOBIC staff for microscopy facilities users
ShuXingYu94/Leaf_Senescence_Index
This repository contains a Fiji (ImageJ) macro designed to evaluate leaf damage area.
Sooperfish/Fiji-glTFsplitter
ImageJ/Fiji macro for bulk splitting glTF metallicRoughness.pngs back into their respective metallic, roughness and AO maps
Turku-BioImaging/split-and-merge
Fiji macro that splits and merges multi-dimensional TIFFs.
waim92/Macro
This is a full macro for images analysis, cell count and co-staining cell count. Different options are available to analyse your image. You can count co-staining cell in unlimited number of images. the counting is done by size. There is an option to batch image analysis to save some time. You can personnalize the code and the analysis to maximize time by avoiding unwanted options.
rsenft1/Fiji-Figure-Generator
Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata