freebayes

There are 14 repositories under freebayes topic.

digo4/Clinical-Genomics
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Language:Shell40 3 011
USDA-VS/vSNP
vSNP -- validate SNPs
Language:Python19 7 1112
isugifNF/polishCLR
A nextflow pipeline for polishing CLR assemblies
Language:Nextflow16 4 304
brwnj/freebayes-nf
a better freebayes-parallel
Language:Nextflow7 2 01
USDA-VS/vSNP3
vSNP -- validate SNPs
Language:Python7 2 91
biodata-fun/course_material
This directory contains material that I've used in different courses
1 3 00
CarolinaPB/WUR_mapping-variant-calling
Short read mapping and variant calling
Language:Python1 1 01
laura-budurlean/SV-calling-with-SpeedSeq
A workflow for using SpeedSeq to align and call SVs from WGS data
Language:Shell1 1 00
tycheleturner/exome_class
Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.
Language:R1 3 01
nglaz0v/P-aeruginosa_antibiotic-resistance_copper
:microscope: Влияние меди на антибиотикорезистентность у синегнойной палочки
Language:HTML00
PulmonomicsLab/mcdr-mtb-standalone
Multi-class classification of drug resistance in MTB clinical isolates
Language:Shell0 2 00
PulmonomicsLab/mcdr-mtb-standalone-v2
Multi-class classification of drug resistance in MTB clinical isolates
Language:Shell0 1 00
cnr-ibba/nf-resequencing-mem
Nextflow resequencing pipeline with bwa-mem and freebayes
Language:Nextflow2 41
ftugberk/BSA-QTL-Mapping-Drosophila-Ananassae
BSA-QTL Mapping in Drosophila Ananassae
Language:R1 0

freebayes

digo4/Clinical-Genomics

USDA-VS/vSNP

isugifNF/polishCLR

brwnj/freebayes-nf

USDA-VS/vSNP3

biodata-fun/course_material

CarolinaPB/WUR_mapping-variant-calling

laura-budurlean/SV-calling-with-SpeedSeq

tycheleturner/exome_class

nglaz0v/P-aeruginosa_antibiotic-resistance_copper

PulmonomicsLab/mcdr-mtb-standalone

PulmonomicsLab/mcdr-mtb-standalone-v2

cnr-ibba/nf-resequencing-mem

ftugberk/BSA-QTL-Mapping-Drosophila-Ananassae