gbif

There are 106 repositories under gbif topic.

  • ebiodiv-matching-frontend

    Language:Vue2

  • spocc

    Species occurrence data toolkit for R

    Language:R116

  • pygbif

    GBIF Python client

    Language:Python109

  • python-dwca-reader

    🐍 A Python package to read Darwin Core Archive (DwC-A) files.

    Language:Python45

  • scrubr

    :warning: ARCHIVED :warning: Clean species occurrence records

    Language:R34

  • GBIF.jl

    Functions and types to access GBIF data from Julia

    Language:Julia19

  • Big_Data_Ecology

    Materials for the Workshop "Big Data Ecology"

    Language:R18

  • checklist-recipe

    Template repository for standardizing thematic species checklist data to Darwin Core using R

    18

  • plantR

    An R Package for Managing Species Records from Biological Collections

    Language:R17

  • finch

    :warning: ARCHIVED :warning: Read Darwin Core Archive files

    Language:R17

  • Rocc

    Get species occurrence data from speciesLink and GBIF, and species lists from the Brazilian Flora 2020. Perform basic taxonomic checks based on Brazilian Flora 2020. Download GADM, WDPA and DIVA-GIS gazetteer shapefiles.

    Language:R16

  • data-publication

    🔓 Open biodiversity data publication by the INBO

    Language:HTML16

  • rs.gbif.org

    GBIF machine-readable resources

    Language:XSLT12

  • la-toolkit

    This toolkit facilitates the installation, maintenance and monitor of Living Atlases portals

    Language:Dart11

  • PhyloNext

    A pipeline for phylogenetic diversity analysis of GBIF-mediated data

    Language:R10

  • specimen-data-use-case

    iDigBio API working group repository on obtaining biodiversity specimen data in R.

    Language:HTML9

  • Bio-Dem

    Explore the relations between biodiversity knowledge and different dimensions of democracy across the globe

    Language:JavaScript8

  • analytics

    The analytics scripts used to calculate and generate all time series (etc.) graphs

    Language:HiveQL8

  • taxonbridge

    R package to merge the NCBI taxonomy and the GBIF backbone taxonomy

    Language:R7

  • gbif-alert

    GBIF Alert is a GBIF occurrence based alert system.

    Language:Python7
  • BIRDS

    BIRDS

    :mag_right: :bird: A set of tools for Biodiversity Informatics in R

    Language:HTML5

  • nordic_oikos_2018_r

    Scientific reuse of openly published biodiversity information: Programmatic access to and analysis of primary biodiversity information using R. Nordic Oikos 2018, pre-conference R workshop. Venue: 18. feb. 2018 10:00 - 19. feb. 2018 16:00, Trondheim

    Language:HTML5

  • Protocolo-y-Procedimientos-para-la-Gestion-de-BDB-enfocado-en-Colecciones-Botanicas

    El protocolo tiene como finalidad entregar las herramientas necesarias para que instituciones que albergan datos de biodiversidad, puedan compartirlos de forma abierta con la comunidad, de esta manera se ayuda a visibilizar colecciones e instituciones, además da opción a ser un aporte al conocimiento ciudadano y científico global, permitiendo ayudar a la toma de decisiones con los distintos usos que se le puedan dar a estos datos, a través de la plataforma GBIF. Además incluye desde cómo organizar la información para crear una base de datos, llevarla a un lenguaje estandarizado para que de esta forma pueda ser comprendida por quien revise o requiera la información, dando alternativas para mejorar la calidad de sus datos a través de herramientas de libre acceso.

    4

  • gbifrb

    GBIF Ruby client; docs: http://www.rubydoc.info/gems/gbifrb/0.1.0

    Language:Ruby4

  • ipt-dcat

    📃 Data Catalog Vocabulary (DCAT) functionality for the IPT

    4

  • ckanext-gbif

    A CKAN extension that that connects with the GBIF API.

    Language:Python4

  • la-pipelines

    Living Atlas Pipelines extensions

    3
  • planning-cards

    planning-cards

    Card resources for GBIF planning exercises: 1) Mobilization; 2) Node Management

    3

  • BiodiversityBox

    🖥️ A preconfigured appliance for biodiversity informatics work.

    3

  • Effects_of_Climatic_Change_on_Species_Distributions

    In this repository you will find an analysis of how rising temperatures have affected the presence of species throughout the Iberian Peninsula.

    Language:Jupyter Notebook2

  • docker-compose-explore

    Explore a GBIF dataset using PostgreSQL and Grafana.

    Language:PLpgSQL2

  • occ-cube

    🗺 Occurrence cube for countries

    2

  • occ-cube-alien

    🗺 Occurrence cubes for non-native taxa in Belgium and Europe

    2

  • GBIF-Issues-Explorer

    Shiny app to explore issues in occurrence records from a GBIF DwC download

    Language:R2

  • documentation

    gbif.no infrastructure and documentation

    2

  • checklist-of-the-freshwater-snails-of-Sabah

    Data from A preliminary checklist of the freshwater snails of Sabah (Malaysian Borneo) deposited in the BORNEENSIS collection, Universiti Malaysia Sabah https://doi.org/10.3897/zookeys.673.12544

    2