gene-families

There are 10 repositories under gene-families topic.

  • hahnlab/CAFE

    Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

    Language:C++109810137

  • LKremer/CAFE_fig

    A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

    Language:Python5921316

  • LKremer/showTree

    showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

    Language:Python30329

  • laelbarlow/amoebae

    Workflow for identifying and classifying homologous gene/protein sequences

    Language:Python20212

  • fgvieira/badirate

    Estimating gene family turnover rates by likelihood-based methods

    Language:Perl103101

  • usadellab/prot-scriber

    Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

    Language:Rust54275

  • FarhanaRiaz123/Pangenome-Analysis

    Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.

    Language:Python2200

  • tbersez/theobroma_genomics

    Postgrad genomics projet

    Language:Perl0201

  • almeidasilvaf/planttfhunter

    An R package to identify plant transcription factors from protein sequence data and classify them in families

    Language:R11

  • dhimmel/hgnc

    Extracting human gene families from HGNC

    Language:Jupyter Notebook20