gene-network

There are 22 repositories under gene-network topic.

  • augustinas1/MomentClosure.jl

    Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations

    Language:Julia456136

  • ZJUFanLab/scRank

    A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data

    Language:R443125

  • jyyulab/SJARACNe

    Scalable Tool for Gene Network Reverse Engineering

    Language:C++2284516

  • SciML/FiniteStateProjection.jl

    Finite State Projection algorithms for chemical reaction networks

    Language:Julia198108

  • xiaomingfu2013/DelaySSAToolkit.jl

    DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays

    Language:Julia15155

  • scastlara/ppaxe

    Text mining tool to retrieve protein-protein interactions from the scientific literature.

    Language:Python13285

  • fran-romero-campero/BRC1NET

    A web based app developed using the R package shiny to explore the transcriptional network downstream from the Arabidopsis thaliana transcriptional factor BRC1.

    Language:R4101

  • connerlambden/Cube

    Intuitive Nonparametric Gene Network Search Algorithm

    Language:Python3133

  • DanShai/Genome

    Genome Network Ala Neural Network

    Language:Python3200

  • fran-romero-campero/ATTRACTOR

    Arabidopsis Thaliana TRanscriptionAl Circadian neTwORk, a web based tool developed using the R package shiny for the exploration and analysis of a transcriptional network in Arabidopsis thaliana constituted by circadian and light responsive transcriptional factors and regulators

    Language:R3140

  • mims-harvard/ngmc

    Network-guided matrix completion

    Language:Python3301

  • CelVoxes/TCC

    Can Cells Talk?

    Language:Jupyter Notebook2000

  • aureliolfdez/pyengnet

    pyEnGNet: optimized reconstruction of gene co-expression networks using multi-GPU

    Language:Cuda1100

  • JBris/dream5_grn_data

    Gold standard gene regulatory network data from the DREAM5 challenge.

    120

  • johndef64/bertopic_graph

    This repo offers a workflow dedicated to utilizing BERTopic for Semantic Graph-based information retrieval in nutrigenomics. It includes Jupyter notebooks on topic modeling and semantic graph creation, aimed at enhance genetic literature exploration. Ideal for genomic researchers, it simplifies the analysis of nutrition-related genetic information.

    Language:Jupyter Notebook1100

  • scastlara/RPGeNet

    Retinitis Pigmentosa gene interaction network website.

    Language:JavaScript1212

  • spencer-hs/Gene-Expression-Networks-3-Brain-Region-R

    Construction of Gene Expression Network across 3 brain regions in the presence of Ethanol using WGCNA in R

    Language:R1001

  • tmichoel/BioFindr.jl

    Fast Inference of Biological Networks from Directed Regulations (Findr) in Julia

    Language:Julia1210

  • emosca-cnr/MOSUB

    Network-based analysis of omics with multi-objective optimization

    Language:R0100

  • mariadsn/CyEnGNet-APP

    The CyEnGNet-App is a plugin for Cytoscape. It implements the EnGNet algorithm, a powerful network analysis method. This app allows users to directly generate the output network in Cytoscape.

    Language:Java0201

  • studyfranco/GNEA

    In this reposity I will give you all script I created. All this script are specialised for one way : annalyse RNA-seq data.

    Language:R0000

  • th789/fflmediation

    R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.

    Language:R0100