gene-prediction

There are 36 repositories under gene-prediction topic.

  • soedinglab/metaeuk

    MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

    Language:C17899023

  • wurmlab/flo

    Same species annotation lift over pipeline.

    Language:Ruby96164128

  • wurmlab/genevalidator

    GeneValidator: Identify problems with predicted genes

    Language:Ruby45119918

  • wurmlab/afra

    Genome Annotation for the Masses

    Language:JavaScript36118621

  • unipept/FragGeneScanRs

    Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.

    Language:Rust247101

  • guigolab/geneidx

    Nextflow pipeline for genome annotation of protein-coding genes

    Language:Nextflow16482

  • Poissonfish/iPat

    iPat allows you to perform GWAS and GS with drags and clicks!

    Language:Java114183

  • guyleonard/gene_prediction_pipeline

    Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS

    Language:Shell10301

  • bpucker/yam

    scripts associated with yam genome assembly

    Language:Python820

  • sjaenick/pprodigal

    Python3 wrapper for parallelized gene prediction using Prodigal

    Language:Python8233

  • unipept/FragGeneScanPlusPlus

    Scalable high-throughput short-read open reading frame prediction

    Language:C7603

  • raktim-mondol/hist2RNA

    Deep learning based method called hist2RNA to predict the expression of genes using digital images of stained tissue samples

    Language:Python3201

  • juliawiggeshoff/AugusMake

    The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.

    Language:Python2100

  • miamib34ch/HSE-Bioinformatics

    Practical and home works in the discipline Bioinformatics.

    Language:HTML2100

  • pentalpha/rna_gatherer_2020

    ncRNA identification, annotation and functional prediction

    Language:Python2301

  • rcs333/NovelVirusSeq

    Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products

    Language:Python2200

  • schellt/busco2snap

    Create a SNAP model from BUSCO output

    Language:Perl2210

  • AstraBert/PredGenesGetPepts

    PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database

    Language:Shell1100

  • heather-han/cancer-gene-prediction

    Prediction of metastasis sites for breast cancer cells

    Language:Python1101

  • hemantdhankar/Gene-Prediction-Meta-Server

    Gene Prediction Meta Server is a project that aims to bring multiple offline gene prediction tools online and integrating them into a single online platform in a user-friendly way. The related video link is attached.

    Language:C1100

  • isaurabhkr/PluriTool

    Cpp Programs for feature extraction

    Language:C++1202

  • lvn3668/genemark

    110

  • rbr7/compgenomics2021

    Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.

    Language:AMPL1100

  • Swart-lab/pogigwasc

    Prediction of genes in genomes with ambiguous stop codons

    Language:Java1210

  • AxelGiottonini/EMBLish

    EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format

    Language:Python0100

  • BlackGokussj2/Augustus

    Augustus is a highly customizable client designed to adapt to any anticheat, making it powerful for both PvP and HvH. It supports both blatant and legit modes, offers a lot of modules, and is compatible with versions 1.8.9 through 1.20 (via ViaVersion).

    Language:TypeScript0100

  • ccdmb/panann

    Pipelines for gene and TE annotation of pangenomes.

    Language:Dockerfile0300

  • dnanto/glimmerize

    automatically create GLIMMER training materials from GenBank records

    Language:Python0100

  • inspirewind/SAGApipeline

    Language:Python0100

  • jaotheboss/Gene-Annotation-and-Prediction

    This project deals with predicting the location of a gene in the human genome based off experimental data

    Language:Python0200

  • Orpowell/SABAT

    A toolkit for identifying gene homologs in closely related species.

    Language:Python0100

  • nagshivank/Microbial-Genomic-Analysis

    A comprehensive microbial genomic analysis pipeline that includes quality control, gene prediction, annotation, and comparative genomic analysis for identifying and visualizing key genetic features in microbial genomes.

    Language:Shell10

  • ridosimanjuntak123/Augustus

    Augustus is a highly customizable client designed to adapt to any anticheat, making it powerful for both PvP and HvH. It supports both blatant and legit modes, offers a lot of modules, and is compatible with versions 1.8.9 through 1.20 (via ViaVersion).

    Language:TypeScript

  • Swart-lab/loxodes-pogigwasc-workflow

    Pogigwasc gene prediction of Loxodes magnus genome

    Language:Python10

  • Swart-lab/pogigwasc-utils

    Language:Python11

  • zhukovanadezhda/gene-prediction

    🔬🚀Prokaryotic gene prediction using Shine-Dalgarno motif and reading frame detection🧬🦠

    Language:Python