gene-prioritization

There are 7 repositories under gene-prioritization topic.

  • liangyy/silver-standard-performance

    A light and flexible R package to evaluate GWAS-based gene prioritization methods for complex traits.

    Language:R4303

  • aGalhoz/wppi

    Gene prioritisation tool using a weighted network methodology based on Gene Ontology and Human Phenotype Ontology annotations to infer closely related genes to given genes of interest.

    Language:R1220

  • ivanwilliammd/IDeRare

    Indonesia Exome Rare Disease Variant Discovery Pipeline. Phenotype analysis part available on Streamlit and PyPi

    Language:Jupyter Notebook1101

  • mbongaerts/Reafect

    Language:Jupyter Notebook1101

  • BreisOne/gene-mining

    EDA of different databases to extract IBD-relevant genes, their coverage in a 10X Genomics spatial transcriptomics panel and the main cell types and tissues related to these genes.

    Language:Jupyter Notebook0100

  • sanket-desai/depranker-git

    DepRanker: A gene impact score calculator (prioritization method) for RNAi / CRISPR screen results

    Language:Python0001

  • erinijapranckeviciene/phenotypelinks

    Software supporting work on "Gene prioritization coupled with next generation sequencing data processing pipeline". This project will be moving to the next level. It doe's not have an associated website yet.

    Language:Perl00