genepattern-module

There are 50 repositories under genepattern-module topic.

  • MethylationCNVAnalysis

    Language:R

  • ComparativeMarkerSelection

    Identify differentially expressed genes that can discriminate between distinct classes of samples.

    Language:R

  • MutPanning

    Docker . module for the single cell toolkit

    Language:Java

  • HISAT2.indexer

    Repo for the HISAT2 .ndexer module which creates indices for the HISAT2.aligner module

    Language:Python

  • HISAT2.aligner

    Repo for the dockerized HISAT2.aligner module

    Language:Python

  • DESeq2ToOdf

    This module will turn a TXT file into ComparativeMarkerSelectionViewer-compatible ODF file

    Language:Python

  • PredictionResultsViewer

    Visualizes prediction results

    Language:JavaScript

  • igv.js

    GenePattern module wrapping igv.js

    Language:JavaScript

  • HierarchicalClusteringViewer

    Views results of hierarchical clustering.

    Language:JavaScript

  • HTSeq.Count

    HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'

    Language:HTML

  • HeatMapViewer

    A configurable heat map viewer that provides users with several options for manipulating and visualizing array-based data

    Language:JavaScript

  • AffySTExpressionFileCreator

    Creates a GCT file from a set of CEL files from Affymetrix ST arrays.

    Language:R

  • DifferentialExpressionViewer

    Visualizes the results of ComparativeMarkerSelection

    Language:JavaScript

  • ClsFileCreator

    This a GenePattern Javascript visualizer that creates a CLS file from a GCT file.

    Language:JavaScript