genetic-analysis
There are 32 repositories under genetic-analysis topic.
grunwaldlab/poppr
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
ahmedfgad/GARI
GARI (Genetic Algorithm for Reproducing Images) reproduces a single image using Genetic Algorithm (GA) by evolving pixel values.
humanlongevity/tredparse
TREDPARSE: HLI Short Tandem Repeat (STR) caller
opencog/agi-bio
Genomic and Proteomic data exploration and pattern mining
Sumidu/gghilbertstrings
Create Hilbert curves in ggplot2
corbinq/GAMBIT
Tool for integrative gene-based association analysis using GWAS summary stats
diptavo/MultiSKAT
MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/functions (including an example dataset) to carry out the MultiSKAT tests.
tonygeorge1984/Python-Sars-Cov-2-Mutation-Analysis
Analysis of Sars Cov-2 Gene Mutations using Python Numpy and Matplotlib
kenhanscombe/plink-custom-r
Setup and starter script for the PLINK R plugin.
gofflab/scProject
Transfer Learning of Gene Expression Signatures in Python.
RoryQo/Rat-Lab
Using Bayesian Analysis (Monte Carlo simulation) to understand the difference between tumor genesis in types of mice from lab data
infinity-a11y/PhyloTrace
PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.
alexhaislip/Oden_Biohacking
At The ODIN, we believe the future is going to be dominated by genetic engineering and consumer genetic design will be a big part of that. We are making that happen by creating kits and tools that allow anyone to make unique and usable organisms at home or in a lab or anywhere.
BaseMax/N-QueenGenetic
Solving N-Queen problem using Genetic Algorithm.
kentavv/mapmaker
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
molepi-precmed/trans-qtls
Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest
matthijsz/pysumstats
Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.
niaid/geneioustraining
Introductory notes on using Geneious (Biomatters) at NIAID
zkamvar/dissertation
Zhian Kamvar's Ph. D. dissertation from Oregon State University
keslingmj/RNASeq
Analyses of RNA-Seq Data
NavpreetDevpuri/DNAc
DNAc is a programming language for DNAs.
piyushgoel997/MutationClassification
Human gene mutation classification using convolutional neural networks
alram6701/23-and-me-Raw-data-Analysis
Genetic Insights from 23andMe Data Analysis: This repository contains Python code that processes 23andMe raw genomic data, performs SNP matching, and explores genetic traits. Genetic traits like eye color, height, intelligence, and disease risks are determined from matched SNPs.
gitikabhardwaj/Genomic-Data-Exploration-Visualizing-Genetic-Variants-and-Allelic-Imbalance
Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.
jordanlab/GADGET_compute
Source code for the GADGET compute module: https://gadget.biosci.gatech.edu/compute/
Krivand/Trans-acting-genetic-variation-affects-the-expression-of-adjacent-genes
Code and raw data used in the analyses for: Trans-acting genetic variation affects the expression of adjacent genes via horizontal mechanisms.
nivasharmaa/GeneTrack
A Java program for analyzing DNA sequences and identifying individuals based on Short Tandem Repeats (STRs). Features profile database creation, STR analysis, individual identification, and relationship detection.
ri-heme/02456
Visualizing genetic ancestry with variational autoencoders
Tengfei-dare/ECN_TP_biolo
analyse code genetic, app shiny
Xemrox/GA-WS15-16
Genetic Algorithms WS15/16 hda
barrettotte/Population-Genetics-Sim
Simulate basic population genetics on fake creatures' DNA. Concepts of mutation, crossover, fitness distribution covered. Prototype algorithm for ProcJam 2018
niaid/Principles-of-Sequence-Analysis-and-Phylogenetics
Materials for the ACE - Uganda course "Principles of Sequence Analysis and Phylogenetics" given in Spring 2020.