genomic-data-science
There are 21 repositories under genomic-data-science topic.
BioInterchange/Ontologies
Home of the Genomic Feature and Variation Ontology (GFVO)
TheJacksonLaboratory/geneweaver-api
A system for the integration and analysis of heterogeneous functional genomics data.
TheJacksonLaboratory/geneweaver-docs
Documentation site for the Geneweaver project.
anmolmore/Enzyme-Classifier-Using-ML
Classify enzymes with geomic sequence using spark-ML
HuntsmanCancerInstitute/GQuery
GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome builds without the need to develop, debug, and maintain custom file parsers. Search for particular germline or somatic mutations, copy number changes, differentially expressed genes, epigenetic marks, anything that can be associated with genomic coordinates. Just point the GQuery indexer at a collection of tabix indexed files and then run either the GQuery command line app or the web API to search them. GQuery is built using a fast, multi-threaded, genomic range search engine with extensive junit testing.
TheJacksonLaboratory/geneweaver-core
The core library for GeneWeaver projects.
TheJacksonLaboratory/geneweaver-db
The GeneWeaver database interaction code.
vy-phung/genomic-data-science-project-about-fetus-and-adult
My personal genomic data science project
BesenbacherLab/kmerPaPa
Tool to calculate a "k-mer pattern partition" from position specific k-mer counts.
overture-stack/website
Overture.bio website, based on Gatsby static site generator
SrinivasSubra/GETS
GETS: a Genomic Tree based Sparse solver. This package accompanies an article to be published in the forthcoming Birkhäuser-ANHA book "Explorations in the Mathematics of Data Science" --- "A genomic tree based sparse solver" by Timothy A. Davis and Srinivas Subramanian.
TheJacksonLaboratory/geneweaver-aon
Ortholog/homolog mapping for Geneweaver
BHPepper/HormoneTherapy-DSS-BreastCancer
Hormone Therapy Decision Support System for Breast Cancer
chiralbd/ISCB20.08
Python for Bioinformatics
ijazali678/2--Python-for-Genomic-Data-Science
The GitHub repository for genomic data science is a collection of resources, tools, and code snippets for analyzing and interpreting genomic data.
MaryAgopian/Variant_Barcoding_M.orygis
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
MikoRabago/Bioinformatics-5-COMP-4312d
A repository containing all the file projects that I have for the Bioinformatics 5 (COMP 4312d) course.
chiraltraining/GDS
Introduction to Genomic Data Science with R
chiraltraining/HDS
Study plan for learning Health Data Science(HDS)
hossainlab/MutationalPatterns
Mutational Signatue Analysis using R
hossainlab/SeqData
Sequencing Data Analysis