germline
There are 16 repositories under germline topic.
dellytools/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
SciLifeLab/Sarek
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
sigven/gvanno
Generic human DNA variant annotation pipeline
pughlab/VisCap
VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data. For algorithmic details, see Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.
tobiasrausch/nRex
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
pblaney/mgp1000
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
caravagnalab/TINC
Tumour-in-Normal Contamination assessment with evolutionary theory.
nf-cmgg/germline
A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
antigenomics/segment-parser
A parser for immune receptor gene data, mainly IMGT references
AdamDS/23AndMeAndClinVar
Cross-reference 23andMe raw variant file with ClinVar
blazerroadg/react-native-azure-cosmos-gremlin
This package provide rest api for azure cosmos germlin graph data base query access
EngLabGMI/germline_caya_solidtumor_analysis
CAYA Analysis
MBeyens/pyAmpli
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
rosaak/germline_caya_solidtumor_analysis
CAYA Analysis
Sydney-Informatics-Hub/GermlineShortV_biovalidation
Workflow for biological validation of germline SNP and indel variant datasets.