glycobiology
There are 16 repositories under glycobiology topic.
BojarLab/glycowork
Package for processing and analyzing glycans and their role in biology.
BojarLab/SweetNet
Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]
Protea-Glycosciences/GlyCombo
GlyCombo, a combinatorial glycan composition assignment tool
ibmm-unibe-ch/glycosylator
A Python framework for the rapid modeling of glycans
BojarLab/LectinOracle
Deep learning model to predict interactions between proteins and glycans [LEGACY; use glycowork implementation]
neel-lab/GlycoEnzOnto
A glycogene ontology describing the functions they perform and their involvement in glycosylation pathways
amanzadi/awesome-glyco
Community-curated list of software packages and data resources for Glycoscience
margotbligh/mass-spec-R-scripts
R scripts for analysis of DI-, GC- and LC-MS data
BojarLab/GIFFLAR
Glycan Informed Foundational Framework for Learning Abstract Representations, based on Combinatorial Complexes and Heterogeneous GNNs
margotbligh/GlycoAnnotateR
R package for calculation and mass spectrometry annotation of glycans
dev-ev/gag-search-dashboard
Script for quantification of glucosaminoglycans (GAGs) based on Proteome Discoverer output, with web-interface powered by Bokeh
imaginationdykim/2022.CC
This repository includes the codes used for channel capacity calculation present in Fuchsberger et al. paper.
margotbligh/Dulce
R package for annotation of glycans in MS1 and MS2 data
margotbligh/sugarMassesPredict
Command line executable tool to calculate all possible glycan molecules and the m/z values of their ions given a set up input parameters.
Old-Shatterhand/SuperSweetNet
GNN model to learn latent space representations of glycans on an atomic level
BojarLab/scGlycomics_b16_branching
Predicting single-cell glycosylation features from scRNA-seq