gwas-summary-statistics
There are 31 repositories under gwas-summary-statistics topic.
statgen/locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
Kukuster/SumStatsRehab
GWAS summary statistics files QC tool
RayDebashree/PLACO
A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
jinghuazhao/TWAS-pipeline
TWAS-pipeline
jiazhao97/BWMR
BWMR (Bayesian Weighted Mendelian Randomization)
mikelove/mrlocus
Older repo for MRLocus. See new website for software usage guide:
corbinq/GAMBIT
Tool for integrative gene-based association analysis using GWAS summary stats
lcrawlab/i-LDSC
Code and simulations using interaction-LD score regression
mancusolab/FactorGo
Software to infer latent pleiotropic components from GWAS summary data
jinghuazhao/SUMSTATS
Format of GWAS summary statistics.
naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
rivas-lab/ukbb-tools
Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data
statgen/localzoom
Make interactive LocusZoom plots from a local GWAS file
rivas-lab/mvpmm
MultiVariate Polygenic Mixture Model
PriyaLakr/Manhattan-plot
Script for designing a manhattan plot.
matthijsz/pysumstats
Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.
MRCIEU/CAMERA
Mendelian Randomization approach using Cross Ancestral Model
rivas-lab/degas-risk
Polygenic risk modeling with latent trait-related genetic components
amorenooya/MasterThesis
R code used for the master thesis entitled "Germline variants associated with prognosis of patients with non muscle invasive bladder cancer".
gpmerola/GSEM-DualSub
A package to perform dual and single genomic subtraction through Genomic SEM.
gpmerola/GWAS-Summary-Report-Generator
This project is designed to read and analyze GWAS (Genome-Wide Association Study) summary statistics from a .gz file. It performs various statistical calculations and generates several plots to visualize the data.
jinghuazhao/hess-pipeline
HESS pipeline
lightning-auriga/gwas-winners-curse
tool for probabilistic correction of Winner's Curse in two-stage GWAS
statgen/locuszoom-hosted
A web service to upload and share GWAS results with LocusZoom.js
statgen/zorp
A simple GWAS parser + CLI
adRn-s/ukbbgwas
Explore SNVs associated with any of UK BioBank Phenotypes, results were made publicly available by: http://www.nealelab.is/uk-biobank
RayDebashree/GxE
Joint meta-analysis of 2-df gene and gene-environment tests in GWAS.
Sung-Bong-Kang/Simple_MR
Easy and simple mendelian randomization pipeline using GWAS summary statistics.
weichengv/genee
A Recalibrated Hypothesis Test for SNP-Level Summary Statistics
garethmarkel/PRScs.jl
Julia implementation of Ge et al's PRScs
weinstockj/filter_somatic_variants_gwas_topmed
A collection of Go scripts to create a database of potential somatic artifacts in the TOPMed germline calls.