haploid

There are 8 repositories under haploid topic.

  • tseemann/snippy

    :scissors: :zap: Rapid haploid variant calling and core genome alignment

    Language:Perl47130581115

  • edgardomortiz/vcf2phylip

    Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

    Language:Python28994685
  • rhapsodi

    mccoy-lab/rhapsodi

    R haploid sperm/oocyte data imputation (rhapsodi). A package for analysis of low-coverage single-cell sequencing data from multiple gametes.

    Language:R4110

  • mccoy-lab/transmission-distortion

    Analysis scripts for "A method for low-coverage single-gamete sequence analysis demonstrates adherence to Mendel's first law across a large sample of human sperm" https://elifesciences.org/articles/76383

    Language:R1010

  • TomMakesThings/Wright-Fisher-Simulator

    Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations

    Language:Jupyter Notebook110

  • davisem/Iudex

    Haploid genetic screening pipeline

    Language:Python0101

  • clstacy/yeastKODoublingTimes

    Available at: https://clstacy.github.io/yeastKODoublingTimes/ . Doubling time estimates for haploid KO library, data from doi: 10.1093/g3journal/jkac240

    Language:HTML10

  • supragya/WrightFisherHaploidSimulation

    Wrigh Fisherman Simulation for Haploid population

    Language:HTML10