haplotype-assembly

There are 8 repositories under haplotype-assembly topic.

  • wangyibin/CPhasing

    C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.

    Language:Python314192

  • baozg/Potato_C88

    Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning

    Language:Python27254

  • PlantandFoodResearch/MCHap

    Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

    Language:Python1851233

  • everestial/phase-extender

    A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.

    Language:Jupyter Notebook14304

  • bodeolukolu/GBSapp

    Automated Pipeline for Variant/Haplotype Calling and Filtering

    Language:Shell7201

  • WuLoli/GAEseq

    GAEseq: A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction

    Language:C++7440

  • andrea-tango/GenHap

    A Novel Computational Method Based on Genetic Algorithms for Haplotype Assembly

    Language:C++3001

  • STTLab/HIV-64148

    HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.

    Language:Python2100