hapmap
There are 6 repositories under hapmap topic.
Poissonfish/iPat
iPat allows you to perform GWAS and GS with drags and clicks!
krishnam/vcf2hmp
convert VCF to HMP format
AnstMikh/DNA
pipeline: from sra, bed, vcf to plink
tbrunetti/CoVE
Concordance Validation across Experiments
jlboat/hapmap_to_qtl2
Convert HapMap file into a useable R qtl2 genotype file