high-throughput-screening

There are 42 repositories under high-throughput-screening topic.

  • sigven/oncoEnrichR

    Explore the cancer relevance of your gene list

    Language:R4961410

  • Chemios/chemios

    Chemios Framework 👨🏾‍🔬: Accelerating Science through Automation

    Language:Python36554

  • NL-BioImaging/biomero

    BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

    Language:Python12242

  • LiamWilbraham/pychemlp

    Easy-to-use python module for training multi-layer perceptrons (neural networks) from molecular SMILES and known associated properties

    Language:Python9205
  • Crow

    JacksonBurns/Crow

    Crow Really Outta Work - User Friendly GUI for High Throughput Experimentation Automation

    Language:Python5260

  • jrem-chem/GPCRLigNet

    Code for an artificial neural net classifier of small molecule GPCR activity

    Language:PureBasic4110

  • YoavLotem/NeuriteOutgrowth

    A tool for automatic neurite outgrowth and cell viability estimation using deep learning and graph theory.

    Language:Jupyter Notebook4200

  • gautammalik-git/AutoDock-GPU-Pipeline

    This pipeline facilitates setting up ligand docking against a protein using AutoDock-GPU. It streamlines the process of docking a ligand library onto a protein structure, leveraging the enhanced performance of AutoDock-GPU for faster results.

    Language:Python3110

  • gmp007/perovskene-materials

    Frontiers in 2D Perovskene: Tailoring ABC3 Perovskite Structures for Next-Generation Material Applications

    Language:Jupyter Notebook3100

  • LiamWilbraham/polyhts

    High-level module for ultra-fast structural optimisation and property calculations of organic co-polymers.

    Language:Python3201

  • NL-BioImaging/biomero-scripts

    Scripts for use with BIOMERO

    Language:Python3221

  • zuzg/drug-screening

    💊 A project examining data from High Throughput Screening center in Poznan.

    Language:Jupyter Notebook33910

  • morchalabi/COMPARE-suite

    Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.

    Language:R2110

  • ydu-sci/Binding_Curve_Viewer

    Visualizing the Equilibrium and Kinetics of Protein-Ligand Binding and Competitive Binding

    Language:Python2100

  • benedictsaunders/polyHTS2

    Language:Python1222

  • biobricks-ai/tox21

    Tox21 quantitative high throughput screening (qHTS) 10K library data

    Language:Clojure1641

  • biobricks-ai/toxcast

    EPA data on 1,800 chemicals across 700+ assay endpoints

    Language:R171

  • cectri/Quantification-of-microbial-robustness

    R Scripts for quantification of microbial robustness from high-throughput screenings

    1100
  • ScreenR

    EmanuelSoda/ScreenR

    An R package that enables the user to perform High Throughput Biological Screening.

    Language:R1201

  • GoranTomacruz/CIPHERCatLib

    Catalyst Library for Material Discovery Studies, including Transition Metal and Transition Metal Derivatives. Materials are compiled from online open-source databases, as well as own calculations. A GUI is included for convenient input file generation. Please expect this to be updated regularly.

    Language:Python120

  • kjappelbaum/structure_comp

    Python package for removal of duplicates in (solid state) structural databases

    Language:Python1352

  • StructuralGenomicsConsortium/CNP25-CHIKV-nsP3-Macrodomain

    This project aims to develop a chemical probe of CHIKV-nsP3-macrodomain starting from a fragment screen

    1260
  • HoloScreen-onco

    Anivader/HoloScreen-onco

    High-throughput detection and enumeration of tumor cells in blood using Digital Holographic Microscopy (DHM) and Deep Learning.

    Language:MATLAB0100

  • cectri/Robustness_Trade-offs

    Performance and Robustness trade-offs in yeast - analysis of phenotypic data from 24 Saccharomyces cerevisiae strains grown in 29 conditions

    0100

  • lhartmanis/compound-screen

    Code and analysis scripts for analyzing newly transcribed RNA in large-scale compound screen experiments

    Language:Python0100

  • mukherjeevaskar267/CRISPRi_Screening_AceticAcid

    Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae

    Language:R0100

  • rbBosshard/pytcpl

    pytcpl is a streamlined Python package that incorporates the levels 4 to 6 of tcpl+tcplFit2, providing concentration-response curve fitting and hit-calling. It utilizes the Invitrodb version 4.1 release (September 21, 2023) as backend database.

    Language:HTML0100
  • lidetector

    sauriiiin/lidetector

    LI Detector analytical pipeline for colony-based high-throughput screens.

    Language:MATLAB0100

  • scbirlab/hts-tools

    🏮 Parsing and analysing platereader absorbance and fluorescence data.

    Language:Python01100

  • StructuralGenomicsConsortium/CNP17-DENVRdrp-EnamineCovalent

    An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the Enamine covalent library. Use the link below to learn about other READDI-AViDD projects.

    0120

  • StructuralGenomicsConsortium/CNP19-CHIKVhelicase-Covalent

    An SGC Open Chemistry Networks Project (number 19) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Enamine Covalent library.

    0110

  • StructuralGenomicsConsortium/CNP21-CHIKVhelicase-Asinex

    An SGC Open Chemistry Networks Project (number 21) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Asinex library.

    0130

  • ideaconsult/orange3-toxfairy

    Python library and Orange3 widget for high-throughput screening data preprocessing, toxicity scoring, and FAIRification

    Language:Python

  • oist/topcorneR

    Plan and analyse large-scale liquid transfers

    Language:R37

  • StructuralGenomicsConsortium/CNP11-DENVRdrp-LifeChem

    An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the LifeChemicals library. Use the link below to learn about our other READDI-AViDD projects.

    10

  • StructuralGenomicsConsortium/CNP27-SARS-CoV-2-NSP14

    This project aims to develop a chemical probe of SARS-CoV2-NSP14 starting from a fragment screen