hla-typing
There are 25 repositories under hla-typing topic.
slowkow/awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
humanlongevity/HLA
xHLA: Fast and accurate HLA typing from short read sequence data
nf-core/hlatyping
Precision HLA typing from next-generation sequencing data
Kingsford-Group/kourami
Kourami: Graph-guided assembly for HLA alleles
deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
PacificBiosciences/hifihla
An HLA star-calling tool for PacBio HiFi data types
OpenOmics/genome-seek
Clinical Whole Genome and Exome Sequencing Pipeline
BGI-flexlab/SOAPTyping
HLA typing for Sanger Based Test
NCBI-Hackathons/HLAClustRView
R package specialized in HLA typing clustering and visualization based on specific similarity metrics
linnil1/HLA_collections
A script to run HLA typing tools from next generation sequencing data
Chelysheva/RNA2HLA
RNA2HLA is a QC tool performing study-wide HLA typing for RNA-seq data (paired on single-end) and thereby identifying the samples from the common source.
TRON-Bioinformatics/tronflow-hla-hd
A Nextflow workflow for HLA typing using HLA-HD
nmdp-bioinformatics/seq-ann
Python package for doing fast and accurate sequence annotation
pyc1216/hlaloh-pipeline
hla-typing by optitype & polysolver , detect loh by lohhla.
cvisb/cvisb_data
Data portal and API for Center for Viral Systems Biology (CViSB) data
dyohanne/HLAXPress
HLAXPress performs estimation of allele-specific expression levels for HLA genes using UMIs.
cobinet/HLA_lli
HLA typing pipelines in nextflow
nmdp-bioinformatics/hla-reporting-ig
FHIR Implementation Guide for HLA reporting
adeschen/docker-arcasHLA
Docker image for arcasHLA software
adeschen/HLAClustRView
R package specialized in HLA typing clustering and visualization based on specific similarity metrics.
nmdp-bioinformatics/pyHML
Python package for working with HML
oicr-gsi/hlaminer
wrapper workflow for BCGSC tool HLAminer
oicr-gsi/hlavbseq
workflow wraps HLA-VBSeq, a tool for estimating the most prevalent HLA types in a sample
pbashyal-nmdp/py-ard
HLA ARD reduction in Python