htseq
There are 11 repositories under htseq topic.
guma44/GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
datasnakes/htseq-count-cluster
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
datasnakes/RNASeek
A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma
gih0004/RNA_seq_pipeline
RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2
nyuhuyang/RNAseq_pipeline
Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R
yejg2017/Sequence-Mapping-Bio
This is a code tutorial for rna or dna sequence mapping by myself-RyanYip
bixBeta/xcode.beta
SLURM job temps @UALBANY
busraata/gwsta-2020-HTSeq-TSS-plot-tutorial
HTSeq TSS plot tutorial
UCSF-Costello-Lab/LG3_Pipeline
The original LG3 pipeline
mattgalbraith/htseq2-docker-singularity
Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity