htseq

There are 11 repositories under htseq topic.

guma44/GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
Language:Jupyter Notebook137 8 5951
datasnakes/htseq-count-cluster
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
Language:Python4 3 90
datasnakes/RNASeek
A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma
Language:HTML2 2 4
gih0004/RNA_seq_pipeline
RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2
Language:Shell2 1 01
nyuhuyang/RNAseq_pipeline
Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R
Language:HTML2 0 01
yejg2017/Sequence-Mapping-Bio
This is a code tutorial for rna or dna sequence mapping by myself-RyanYip
Language:Shell2 0 00
bixBeta/xcode.beta
SLURM job temps @UALBANY
Language:Shell1 1 0
Fatemehrshd/RNA-Seq-Analysis
Language:Jupyter Notebook1 1 0
busraata/gwsta-2020-HTSeq-TSS-plot-tutorial
HTSeq TSS plot tutorial
0 1 00
UCSF-Costello-Lab/LG3_Pipeline
The original LG3 pipeline
Language:Shell0 4 1720
mattgalbraith/htseq2-docker-singularity
Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity
Language:Dockerfile1 0