icgc

There are 11 repositories under icgc topic.

ropensci/UCSCXenaTools
:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
Language:R103 5 4412
ICGC-TCGA-PanCancer/PCAP-core
Legacy, see cancerit/PCAP-core: NGS reference implementations and helper code for the IGCG/TCGA Pan-Cancer Analysis Project
Language:Perl13 8 8314
Ad115/ICGC-data-parser
To automate data collection from ICGC database.
Language:Jupyter Notebook6 1 10
dogmaticcentral/CG
CG - cancer genomics pipeline
Language:Python5 3 14
qbic-pipelines/icgc-featurecounts
A Nextflow pipeline to run featureCounts on RNAseq BAM files on ICGC in AWS/AWS Batch
Language:Nextflow3 12 63
brettwhitty/icgc-dcmwg
Various utility scripts and ICGC DCC data specification templates / conversion tools written during early development work on the current ICGC DCC data portal (2.0)
Language:Perl2 3 01
gencat/ICGC-focalbosc
Foc al Bosc: Visor incendis forestals Catalunya 1986-2017
Language:JavaScript2 9 12
LincolnSteinLab/icgc-viewer
A JBrowse plugin for viewing ICGC Data
Language:JavaScript2 2 103
icgc-argo/uikit
Re-usable React Components for ICGC-ARGO sites
Language:TypeScript1 10 502
OpenICGC/api-territorial-docs
Documentació i exemples de l'API Territorial de l'ICGC
Language:HTML1 1 00
dockstore/icgc-storage-client-plugin
icgc storage client file provisioning plugin
Language:Java3 11