imagej2
There are 22 repositories under imagej2 topic.
morphonets/SNT
The ImageJ framework for quantification of neuronal anatomy
knime-ip/knip
KNIME Image Processing Extension
DylanMuir/ReadImageJROI
Matlab function to import ROIs from ImageJ
tferr/Scripts
:microscope::cocktail: Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
morphonets/cx3d
The Cx3D modeling framework in SciView and SNT
himsr-lab/CU-CellSeg
Cell segmentation of multi-channel images
hadim/mm_scripts
A collection of scripts related to Micro-Manager.
berdal84/Mageek-Java
Mageek is an ImageJ Java plugin to batch process microscope images
fmeyenhofer/NanoZoomer-J
ImageJ plugin for handling NDPI files.
himsr-lab/CU-IScore
IHC scoring of multi-channel images
imcf/python-micrometa
:coffee: :snake: :microscope: Package for processing metadata from various light-microscopy related data formats.
BenjaminEscribano/PrairieDataManager
Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji
h39s/VessCoopJ
ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis
himsr-lab/CU-MacroLibrary
ImageJ2 macro library with variables and functions
imcf/jython-scijava-logging
:snake::coffee::bookmark_tabs: Jython package for using SciJava's LogService for logging.
jdebes/image-segmentation-imagej-plugin
ImageJ plugin containing a collection image segmentation algorithms.
4QuantOSS/scijava-jupyter-kernel
Write SciJava scripts in Jupyter notebook!
imcf/jython-ome-model
:coffee: :snake: :microscope: :bookmark: :bookmark_tabs: A mavenized package of the Open Microscopy Environment "ome-model" Python module to be used in ImageJ2.
jithin8mathew/ImageJAugmentation
An Imagej Plugin for Large Scale Image Data Augmentation
kmader/spark-scifio
A Spark-interface for the io.scif and other libraries to take advantage of the ImageJ2 ecosystem.
mmkkozak/IQMwR
ImageJ Fiji plugin containing 12 FR-IQA measures for grayscale images.