karyotype

There are 12 repositories under karyotype topic.

  • eweitz/ideogram

    Chromosome visualization for the web

    Language:JavaScript2942211671

  • caravagnalab/CNAqc

    CNAqc - Copy Number Alteration (CNA) Quality Check package

    Language:R184308

  • sanjaynagi/rna-seq-pop

    Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

    Language:Jupyter Notebook182819

  • lukasuz/Banding-Pattern-Extraction

    Banding pattern extraction and banding pattern segmentation mask generation for stained banded chromosome images.

    Language:Python15206

  • SouthGreenPlatform/GeMo

    A mosaic genome painting tool for plant genomes

    Language:JavaScript1514151

  • marccasian/KaryML-Framework

    Machine Learning (ML) research within medicine and healthcare represents one of the most challenging domains for both engineers and medical specialists. One of the most desired tasks to be accomplished using ML applications is represented by disease detection. A good example of such a task is the detection of genetic abnormalities like Down syndrome, Klinefelter syndrome or Hemophilia. Usually, clinicians are doing chromosome analysis using the karyotype to detect such disorders. The main contribution of the current article consists of introducing a new approach called KaryML Framework, which is extending our previous research: KarySOM: An Unsupervised Learning based Approach for Human Karyotyping using Self-Organizing Maps . Our major goal is to provide a new method for an automated karyotyping system using unsupervised techniques. Additionally, we provide computational methods for chromosome feature extraction and to develop an intelligent system designed to aid clinicians during the karyotyping process.

    Language:Python14130

  • andreasprlic/karyotypeSVG

    A javascript library to generate SVG based ideograms of chromosomes showing cytogenetic bands

    Language:JavaScript6206

  • i2-wustl/CytoGPS

    CytoGenetic Pattern Sleuth (CytoGPS) is a software tool to parse semi-structured ISCN-based karyotypes in text formats. This Java-based software was developed using ANTLR (ANother Tool for Language Recognition).

    Language:Java3501

  • ggirelli/ggkaryo2

    ggplot2-based karyotype plotting R package

    Language:R123

  • PingjunChen/ChromosomeSeg

    Overlapped chromosome segmentation

    Language:Python110

  • jviz-deprecated/biojviz-ideogram

    Biojviz ideogram element

    Language:HTML0200

  • jviz-deprecated/biojviz-karyoviewer

    Biojviz karyotype viewer element

    Language:HTML20