lc-ms
There are 54 repositories under lc-ms topic.
ElucidataInc/ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.
xieguigang/mzkit
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
AutoFlowResearch/SmartPeak
Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing
chhh/batmass
Mass spectrometry data visualization
rformassspectrometry/metaRbolomics-book
The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
MolecularCartography/Optimus
Workflow for LC-MS feature analysis and spatial mapping
computational-metabolomics/beamspy
BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)
computational-metabolomics/msPurity
R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
chhh/MSFTBX
MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)
zmzhang/pymass
Package for analyzing MS with Python
novak-jiri/cyclobranch
A tool for mass spectrometry data analysis.
workflow4metabolomics/workflow4metabolomics
Workflow4Metabolomics meta repository
computational-metabolomics/metabolomicsWorkbenchR
R/Bioconductor Package - Interface to the Metabolomics Workbench RESTful API
computational-metabolomics/structToolbox
R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox
LizzyParkerPannell/Untargeted_metabolomics_workflow
Collaborative workflow for untargeted metabolomics data processing and analysis using open-source tools. https://doi.org/10.3390/metabo13040463
stanstrup/QC4Metabolomics
QC systems for metabolomics studies
ajgiuliani/MSj.jl
A mass spectrometry package for Julia
SysMedOs/lipidhunter
LipidHunter is capable to perform bottom up identification of lipids from LC-MS/MS and shotgun lipidomics data by resembling a workflow of manual spectra annotation. LipidHunter generates interactive HTML output with its unique six-panel-image, which provides an easy way to review, store, and share the identification results.
jbellamycarter/pepfoot
PepFoot: a user friendly GUI for protein footprinting analysis
computational-metabolomics/struct
R/Bioconductor package - STRUCT: STatistics in R Using Class Templates
hcji/AutoMS
Deep Denoising Autoencoder-assisted Continuous Scoring of Peak Quality in High-Resolution LC−MS Data
jorainer/xcmsTutorials
Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor package
mjr129/metaboclust
█ 𝐓𝐇𝐈𝐒 𝐈𝐒 𝐀 𝐌𝐈𝐑𝐑𝐎𝐑 𝐎𝐅 𝐓𝐇𝐄 𝐒𝐀𝐌𝐄 𝐑𝐄𝐏𝐎𝐒𝐈𝐓𝐎𝐑𝐘 𝐎𝐍 𝐁𝐈𝐓𝐁𝐔𝐂𝐊𝐄𝐓 – 𝐓𝐇𝐈𝐒 𝐏𝐀𝐆𝐄 𝐈𝐒 𝐍𝐎𝐓 𝐌𝐎𝐍𝐈𝐓𝐎𝐑𝐄𝐃 – 𝐏𝐋𝐄𝐀𝐒𝐄 𝐒𝐄𝐄 𝐓𝐇𝐄 𝐁𝐈𝐓𝐁𝐔𝐂𝐊𝐄𝐓 𝐏𝐀𝐆𝐄 𝐅𝐎𝐑 𝐓𝐇𝐄 𝐋𝐀𝐓𝐄𝐒𝐓 𝐃𝐄𝐓𝐀𝐈𝐋𝐒
MolecularCartography/OptimusViewer
An app for visualizing LC-MS features detected with Optimus workflow
YogiOnBioinformatics/Computational-Drug-Discovery-Internship-at-Merck
Description of work done at Merck pharmaceutical company in the summer of 2018 as a Computational Drug Discovery Intern at West Point, PA. Information excludes all proprietary information belonging to Merck & Co.
computational-metabolomics/mspurity-galaxy
Galaxy tools for msPurity package: includes precursor ion purity calculations and spectral matching
computational-metabolomics/beamspy-galaxy
Galaxy tools for BEAMSpy: Birmingham mEtabolite Annotation for Mass SpectroMetry (Python Package)
computational-metabolomics/pmp
R/Bioconductor package - Peak Matrix Processing and signal batch correction for metabolomics data sets
ethanbass/mzinspectr
Load and analyze MS-DIAL alignment files in R for analysis of mass spectrometry data.
YonghuiDong/Miso
R package for Multi-isotope Labeling for Metabolomics Analysis
JoseRaulBS/HighResMS
High Resolution Software for Mass Spectrometry
kopeckylukas/py-mamsi
The Multi-assay Mass Spectrometry Integration Project
Lacterd/HeuSMA
A Heuristic Strategy for Metabolomics Analysis based on multiple chromatographic gradients to enhance metabolite coverage in untargeted metabolomics analysis.
margotbligh/Dulce
R package for annotation of glycans in MS1 and MS2 data
SLINGhub/StratiRandom
R script and Shiny app to perform stratified randomisation