light-sheet-microcopy
There are 16 repositories under light-sheet-microcopy topic.
google-research/zapbench
The Zebrafish Activity Prediction Benchmark measures progress on the problem of predicting cellular-resolution neural activity throughout an entire vertebrate brain.
TheDeanLab/navigate
navigate - open source light-sheet microscope controls
DanuserLab/u-shape3D
Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.
JRSommernes/Vectorial-Light-Sheet-Simulation
Vectorial ray tracing software for light-sheet microscopes
takushim/momomagick
Python toolkit for 2D/3D image processing using CPU or GPU
Glasgow-ICG/open-optical-gating
A fully open-source system for prospective optical gating in 3D fluorescence light sheet cardiac imaging
comp-imaging-sci/CLS-Mask_R-CNN
Crown-like Structure Detection and Segmentation in 3D Light-sheet Microscopy Imaging with Mask R-CNN
Glasgow-ICG/waterproof-intensity-meter
Measuring laser intensity underwater in a sample chamber with an open-hardware solution
jerrywei2801/LSFM-destriping
Stripe artifacts elimination of LSFM images using deep learning method
nranthony/SPIM-Matlab-Destripe-Deshake
Matlab app to destripe, using Pierre Weiss VSNR, and deshake, using Guizar-Sicairos, Thurman, and Fienup Efficient subpixel image registration algorithms
drbeiliu/beiliu
Bei Liu's personal website
greciaro/Light-Sheet-Microscopy
cells activity, voxel_to_volume in tissue conversion, density and stats
mcrewcow/ChaginLab
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
SierraD/Multi-Orientation-Maxwell
Multi-Orientation MAXWELL: A novel approach to three-dimensional super resolution mapping of X-ray excited, visible light emitting fluorophores using the X-ray Light Sheet Microscopy technique MAXWELL.
Animadversio/Light-Sheet-Data-Processing-Script
Collection of scripts for running data processing of light sheet data
PTRRupprecht/Cell_Detection
Python code for merging and refinement of detected neurons in large 3D stacks