linkage-mapping

There are 10 repositories under linkage-mapping topic.

  • LepWrap

    pdimens/LepWrap

    A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.

    Language:Perl11151

  • Cristianetaniguti/Reads2Map

    A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.

    Language:WDL9271

  • alethere/SmoothDescent

    Repository of SmoothDescent R package. Smooth Descent is a map-cleaning algorithm that can calculate identity by descent probabilities and correct genotyping errors based on marker maps.

    Language:R4110

  • mschemmel/gmap

    An R package to visualize genetic maps.

    Language:R1103

  • tomkurowski/vcf2loc

    VCF to JoinMap loc (variant-to-marker) conversion tool

    Language:Python1101
  • basil_mapping

    simhayn/basil_mapping

    Genetic mapping and QTL analysis of basil

    0100

  • tfording/marmorata_linkagemap

    Marmorata Linkage Map

    Language:Python0201

  • ulrichga/Lfab_QTL

    Analyses of my MSc Thesis: "Genetic architecture of parasitoid counteradaptation to symbiont-conferred resistance"

    Language:R0100

  • CNuge/phase-imputation

    This program leverages zero recombination clusters and their relative positions on a linkage group to impute phases for missing data with high fidelity.

    Language:Python20

  • mtekman/linkage-converter

    Converts between linkage output formats {Genehunter, Merlin, Simwalk, Swiftlink} → Allegro

    Language:Python20