linkml
There are 101 repositories under linkml topic.
monarch-initiative/ontogpt
LLM-based ontological extraction tools, including SPIRES
linkml/linkml
Linked Open Data Modeling Language
biolink/biolink-model
Schema and generated objects for biolink data model and upper ontology
mapping-commons/sssom
Simple Standard for Sharing Ontology Mappings
cidgoh/DataHarmonizer
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
mapping-commons/sssom-py
Python toolkit for SSSOM mapping format
monarch-initiative/koza
Data transformation framework for LinkML data models
linkml/schemasheets
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
INCATools/semantic-sql
SQL and SQLite builds of OWL ontologies
linkml/schema-automator
Automated assistance for the schema development lifecycle
linkml/linkml-model
Link Modeling Language (LinkML) model
cmungall/semantic-llama
A knowledge extraction tool that uses a large language model to extract semantic information from text
microbiomedata/nmdc-schema
National Microbiome Data Collaborative (NMDC) unified data model
linkml/linkml-runtime
Runtime support for linkml generated models
linkml/linkml-map
Mapping between LinkML schemas
cancerDHC/ccdhmodel
CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)
chemkg/chemrof
Schema for chemistry ontology classes
linkml/linkml-store
wrapper for multiple linkml storage engines
INCATools/kgcl-rdflib
Tools for working with KGCL
monarch-initiative/monarch-ingest
Data ingest application for Monarch Initiative knowledge graph using Koza
ghga-de/ghga-metadata-schema
Metadata schema for the German Human Genome-Phenome Archive (GHGA)
linkml/linkml-datalog
Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instance data. ALPHA.
monarch-initiative/monochrom
Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
linkml/linkml-registry
Registry of schemas that use LinkML
linkml/prefixmaps
Semantic prefix map registry
INCATools/kgcl
Datamodel for KGCL (Knowledge Graph Change Language)
linkml/linkml-owl
Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)
isamplesorg/metadata
Collation of metadata examples and notes for the project
linkml/linkml-project-template
A template for LinkML projects using poetry and gen-project
cmungall/json-flattener
Python library for denormalizing nested dicts or json objects to tables and back
linkml/sparqlfun
sparql templates for linkml (alpha)
monarch-initiative/babelon
A format for language profiles for ontologies
alliance-genome/agr_curation_schema
Schema repository for the Alliance of Genome Resources persistent data store
cmungall/linkml-phenopackets
EXPERIMENTAL rendering of phenopackets in linkml
linkml/linkml-runtime.js
An implementation of the linkml-runtime in javascript ALPHA VERSION
py-typedlogic/py-typedlogic
Logic plus python types