lipids

There are 23 repositories under lipids topic.

  • pmartR/pmartR

    The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.

    Language:R37127016

  • p-j-smith/lipyphilic

    A Python toolkit for the analyis of lipid membrane simulations

    Language:Python2924811

  • LoLab-MSM/PyBILT

    Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.

    Language:Python2471910

  • patrickfuchs/buildH

    :computer: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.

    Language:Python145887

  • GMPavanLab/SwarmCGM

    Optimization tool for calibrating coarse-grained force fields of lipids, relying on the simultaneous usage of reference AA trajectories (bottom-up) and experimental data (top-down)

    Language:Python10610

  • SysMedOs/lipidhunter

    LipidHunter is capable to perform bottom up identification of lipids from LC-MS/MS and shotgun lipidomics data by resembling a workflow of manual spectra annotation. LipidHunter generates interactive HTML output with its unique six-panel-image, which provides an easy way to review, store, and share the identification results.

    Language:Python73106

  • MolMeDB/MolMeDB

    MolMeDB is an open chemistry database about interactions of molecules with membranes.

    Language:JavaScript56643

  • MOSAICS-NIH/MOSAICS

    A collection of tools for characterizing membrane structure and dynamics within simulated trajectories of molecular systems.

    Language:C++4241

  • saysayani11/Nanoparticle-Bilayer-Dynamics

    A molecular dynamics approach to study the permeation of nanoparticles through lipid bilayer

    Language:Shell3111

  • ShinyFabio/ADViSELipidomics

    ADViSELipidomics is a novel Shiny app for the preprocessing, analysis, and visualization of lipidomics data.

    Language:R3210
  • ProLint

    ProLint/ProLint

    The ProLint Webserver

    Language:JavaScript22140

  • Akshayap05/Mendelian-Randomisation-of-Lipid-Profiles

    The purpose of the study was to look at the causal relationships between lipid profiles (TG, HDL, and LDL) and diseases, drugs, and lifestyle choices. MR analysis was used and applied to GWAS from the UK Biobank to examine these associations using analysis software RStudio.

    Language:R1100

  • GarrettLab-UF/LipidMatch-Normalizer

    Quantify lipids using a feature table and internal standards table

    Language:R1302

  • IPHYS-Bioinformatics/LORA

    LORA: Lipid Over-Representation Analysis

    Language:Python1000

  • agruzinov/lipmix_utils

    Set of python scripts to extend the capabilities of the LIPMIX software for analyzing small-angle scattering data from lipid systems (as part of the ATSAS package).

    Language:Python0100

  • carolynnharris/Hot-Spring-iGDGT-Profiles

    Visualize relationship between pH, temperature, and the relative abundance of iGDGT lipids.

    Language:R0100

  • GarrettLab-UF/LipidMatch-Quant_Statistics

    Statistical analysis portion of the LMQ software. Note that this software is incomplete.

    Language:R0200

  • jules552/ml-project-2-genelipids

    Predicting lipid abundance in a murine brain section from spatial gene expression

    Language:Jupyter Notebook0000

  • octopode/homeocurvature-2024

    Data, scripts, and figures for "Homeocurvature adaptation of phospholipids to pressure in deep-sea invertebrates"

    Language:R0100

  • patrickfuchs/autoLipMap

    :computer: Automatic lipid mapping topology writer

    Language:Python0331

  • SysMedOs/epiLION

    epiLipidome Identifier and Optimized Nomenclature

    Language:Python0312

  • Hartviger/B.Sc._programs

    My B.Sc. project involves a collaboration with the M3 Lab Group at SDU. The purpose is to create a Shiny app that will be published. My code will be used in the app to visualize and analysis Metabolomics, Lipidomics data.

    Language:R10

  • mcguinlu/CPRD-LRA

    Code for an analysis of the association of lipid regulating agents (e.g. statins) with incidence of dementia outcomes

    Language:Stata201